Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Sillago sihama [149]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
HM2413101Dinucleotide(CA)918156..173374  bpPrimer
HM2412311Dinucleotide(AC)34681..6890  bpPrimer
HM2412971Dinucleotide(GT)918116..133390  bpPrimer
HM2412972Dinucleotide(GT)1224136..159390  bpPrimer
HM2412973Trinucleotide(GGC)515369..383390  bpPrimer
HM2412201Dinucleotide(CA)1428172..199467  bpPrimer
HM2412202Dinucleotide(CA)3060204..263467  bpPrimer
HM2412203Dinucleotide(AC)918265..282467  bpPrimer
HM2412281Dinucleotide(CA)102013..32559  bpPrimer
HM2412282Dinucleotide(CA)1938128..165559  bpPrimer
HM2413451Dinucleotide(CA)612250..261857  bpPrimer
HM2413452Dinucleotide(CA)816280..295857  bpPrimer
HM2412811Dinucleotide(TG)1938280..317589  bpPrimer
HM2412812Dinucleotide(GT)714325..338589  bpPrimer
HM2412331Dinucleotide(AC)1632113..144212  bpPrimer
HM2413441Dinucleotide(TG)61284..95290  bpPrimer
HM2413442Tetranucleotide(TGTC)520245..264290  bpPrimer
HM2412921Dinucleotide(CA)1836238..273473  bpPrimer
HM2412211Dinucleotide(AC)81632..47529  bpPrimer
HM2412212Dinucleotide(CA)3060161..220529  bpPrimer
HM2412851Dinucleotide(CA)1734278..311674  bpPrimer
HM2412852Dinucleotide(CA)714431..444674  bpPrimer
HM2412853Dinucleotide(AC)714446..459674  bpPrimer
HM2412854Dinucleotide(AC)714462..475674  bpPrimer
HM2413021Trinucleotide(CTC)1030256..285785  bpPrimer
HM2413022Dinucleotide(CA)612476..487785  bpPrimer
HM2413023Dinucleotide(AC)1020677..696785  bpPrimer
HM2412261Dinucleotide(CA)918105..122483  bpPrimer
HM2412262Dinucleotide(AC)1836129..164483  bpPrimer
HM2412263Dinucleotide(AC)1122226..247483  bpPrimer
HM2412321Dinucleotide(TG)122418..41181  bpPrimer
HM2412511Dinucleotide(AC)81663..78155  bpPrimer
HM2412512Dinucleotide(AC)61283..94155  bpPrimer
HM2412931Dinucleotide(AC)173489..122244  bpPrimer
HM2413231Dinucleotide(GT)714104..117267  bpPrimer
HM2413232Dinucleotide(TG)612131..142267  bpPrimer
HM2413131Dinucleotide(CA)918141..158355  bpPrimer
HM2412541Dinucleotide(CA)714109..122188  bpPrimer
HM2413321Tetranucleotide(CACG)624204..227393  bpPrimer
HM2413091Dinucleotide(TG)91887..104752  bpPrimer
HM2413092Dinucleotide(GT)816106..121752  bpPrimer
HM2413093Mononucleotide(A)1616584..599752  bpPrimer
HM2412371Dinucleotide(GT)153063..92432  bpPrimer
HM2413001Dinucleotide(AC)1632373..404416  bpPrimer
HM2412891Dinucleotide(AC)1122318..339573  bpPrimer
HM2412892Dinucleotide(CA)1530343..372573  bpPrimer
HM2413031Dinucleotide(TG)122447..70338  bpPrimer
HM2412711Dinucleotide(CA)816156..171269  bpPrimer
HM2413371Mononucleotide(A)101088..97580  bpPrimer
HM2413341Mononucleotide(T)1111443..453777  bpPrimer
HM2412401Dinucleotide(CA)1122340..361538  bpPrimer
HM2412402Mononucleotide(T)1111417..427538  bpPrimer
HM2412241Dinucleotide(AC)153074..103246  bpPrimer
HM2413351Dinucleotide(CA)612122..133354  bpPrimer
HM2412301Dinucleotide(CA)142876..103177  bpPrimer
HM2412781Dinucleotide(TG)2244191..234497  bpPrimer
HM2412782Dinucleotide(GT)2652242..293497  bpPrimer
HM2412671Mononucleotide(G)1111172..182370  bpPrimer
HM2412741Dinucleotide(GA)91857..74481  bpPrimer
HM2412742Dinucleotide(AC)295887..144481  bpPrimer
HM2412743Dinucleotide(AG)612147..158481  bpPrimer
HM2412744Dinucleotide(CA)612278..289481  bpPrimer
HM2412745Dinucleotide(CA)1122292..313481  bpPrimer
HM2412351Dinucleotide(AC)1530340..369515  bpPrimer
HM2413191Dinucleotide(AC)816260..275444  bpPrimer
HM2413111Dinucleotide(TG)714288..301466  bpPrimer
HM2413112Dinucleotide(AC)816332..347466  bpPrimer
HM2413061Dinucleotide(AC)1020205..224321  bpPrimer
HM2413062Dinucleotide(AC)612235..246321  bpPrimer
HM2412951Dinucleotide(AC)1632215..246611  bpPrimer
HM2412952Dinucleotide(CA)816290..305611  bpPrimer
HM2412691Dinucleotide(CA)612105..116469  bpPrimer
HM2413251Dinucleotide(AC)71485..98117  bpPrimer
HM2413252Dinucleotide(AC)816100..115117  bpPrimer
HM2412981Dinucleotide(CA)1530269..298354  bpPrimer
HM2412982Dinucleotide(CA)714314..327354  bpPrimer
HM2412941Dinucleotide(TG)1734176..209403  bpPrimer
HM2412881Dinucleotide(CA)714154..167378  bpPrimer
HM2412882Dinucleotide(AC)1938187..224378  bpPrimer
HM2412801Dinucleotide(CA)2346103..148398  bpPrimer
HM2412802Dinucleotide(CA)714295..308398  bpPrimer
HM2412291Dinucleotide(AC)1632180..211547  bpPrimer
HM2412292Mononucleotide(A)1111228..238547  bpPrimer
HM2412293Dinucleotide(CA)918327..344547  bpPrimer
HM2412294Dinucleotide(AC)918350..367547  bpPrimer
HM2412421Dinucleotide(AC)122453..76334  bpPrimer
HM2412501Composite(TC)14(AC)844385..428486  bpPrimer
HM2412751Dinucleotide(AC)61289..100388  bpPrimer
HM2412752Dinucleotide(AC)816123..138388  bpPrimer
HM2412753Dinucleotide(CA)1632320..351388  bpPrimer
HM2412754Dinucleotide(AC)1428353..380388  bpPrimer
HM2412461Dinucleotide(AC)1020122..141475  bpPrimer
HM2412871Dinucleotide(TG)91879..96532  bpPrimer
HM2412872Dinucleotide(TC)3060171..230532  bpPrimer
HM2412873Dinucleotide(TG)714289..302532  bpPrimer
HM2412874Dinucleotide(GT)1326416..441532  bpPrimer
HM2412961Dinucleotide(TG)163298..129443  bpPrimer
HM2412181Dinucleotide(AC)714185..198478  bpPrimer
HM2412182Composite(AC)16(CA)1256203..258478  bpPrimer
HM2412183Dinucleotide(AC)918260..277478  bpPrimer
HM2412184Dinucleotide(AC)1122382..403478  bpPrimer
HM2412185Dinucleotide(CA)918421..438478  bpPrimer
HM2412861Dinucleotide(GT)612212..223420  bpPrimer
HM2412862Dinucleotide(AC)2550302..351420  bpPrimer
HM2412221Mononucleotide(T)1010153..162423  bpPrimer
HM2412222Dinucleotide(CA)1326325..350423  bpPrimer
HM2412223Dinucleotide(CA)1122353..374423  bpPrimer
HM2413171Dinucleotide(AC)816426..441687  bpPrimer
HM2413071Dinucleotide(CA)612166..177485  bpPrimer
HM2413072Dinucleotide(CA)612307..318485  bpPrimer
HM2413073Dinucleotide(CA)1020321..340485  bpPrimer
HM2412411Dinucleotide(CA)1122265..286586  bpPrimer
HM2412251c*(CA)28(CACAT)6*82355..436597  bpPrimer
HM2412271Tetranucleotide(TCTG)104031..70798  bpPrimer
HM2412272Dinucleotide(AC)2346407..452798  bpPrimer
HM2412841Dinucleotide(AC)1530186..215378  bpPrimer
HM2412842Dinucleotide(CA)2040229..268378  bpPrimer
HM2412651Mononucleotide(T)1212308..319486  bpPrimer
HM2412652Dinucleotide(AC)612396..407486  bpPrimer
HM2412491Dinucleotide(AC)1122486..507802  bpPrimer
HM2412492Dinucleotide(AC)612509..520802  bpPrimer
HM2412381Mononucleotide(A)131379..91723  bpPrimer
HM2412382Dinucleotide(CA)1530367..396723  bpPrimer
HM2412383Dinucleotide(CA)714405..418723  bpPrimer
HM2413051Dinucleotide(GT)1122284..305431  bpPrimer
HM2412701Dinucleotide(AC)81616..31139  bpPrimer
HM2412702Dinucleotide(CA)71441..54139  bpPrimer
HM2412561Dinucleotide(CA)714125..138236  bpPrimer
HM2412341Dinucleotide(CA)173437..70180  bpPrimer
HM2412581Mononucleotide(A)10102..11335  bpPrimer
HM2413241Dinucleotide(CA)612281..292545  bpPrimer
HM2413242Dinucleotide(AC)714428..441545  bpPrimer
HM2412791Dinucleotide(AC)1326159..184460  bpPrimer
HM2412792Dinucleotide(CA)1632186..217460  bpPrimer
HM2412481Dinucleotide(AC)918130..147262  bpPrimer
HM2412482Dinucleotide(AG)918180..197262  bpPrimer
HM2412991Dinucleotide(CA)1530247..276425  bpPrimer
HM2413201Dinucleotide(CA)816345..360381  bpPrimer
HM2412761Dinucleotide(TG)1734141..174490  bpPrimer
HM2412762Dinucleotide(TG)1428177..204490  bpPrimer
HM2412901Dinucleotide(TG)1836193..228359  bpPrimer
HM2413461Mononucleotide(T)101039..48384  bpPrimer
HM2413462Dinucleotide(AC)612262..273384  bpPrimer
HM2413463Dinucleotide(AC)714276..289384  bpPrimer
HM2412191Dinucleotide(AC)816216..231514  bpPrimer
HM2412192Dinucleotide(CA)3774233..306514  bpPrimer
HM2413141Dinucleotide(TG)81650..65345  bpPrimer
HM2413142Dinucleotide(TG)61297..108345  bpPrimer
HM2413181Trinucleotide(ACA)51545..59606  bpPrimer
HM2413182Mononucleotide(A)1212209..220606  bpPrimer
HM2413183Dinucleotide(CA)714447..460606  bpPrimer
HM2413221Dinucleotide(AC)816158..173494  bpPrimer
HM2412591Dinucleotide(AG)71455..68352  bpPrimer
HM2412592Dinucleotide(AC)612131..142352  bpPrimer
HM2412593Dinucleotide(AC)612145..156352  bpPrimer
HM2412594Dinucleotide(CA)612217..228352  bpPrimer
HM2412771Dinucleotide(AC)612155..166519  bpPrimer
HM2412772Dinucleotide(GA)612168..179519  bpPrimer
HM2412773Dinucleotide(CA)714284..297519  bpPrimer
HM2412774Dinucleotide(AC)1326299..324519  bpPrimer
HM2412775Dinucleotide(TG)918407..424519  bpPrimer
HM2412776Dinucleotide(GT)612454..465519  bpPrimer
HM2412777Dinucleotide(GT)1020496..515519  bpPrimer
HM2412681Mononucleotide(C)10104..13429  bpPrimer
HM2412682Dinucleotide(CA)612238..249429  bpPrimer
HM2412831Dinucleotide(CA)183629..64320  bpPrimer
HM2412832Dinucleotide(CA)1836199..234320  bpPrimer
HM2412361Dinucleotide(CA)1530180..209324  bpPrimer
HM2412231Dinucleotide(CA)71496..109497  bpPrimer
HM2412232Dinucleotide(CA)2856111..166497  bpPrimer
HM2412551Dinucleotide(CA)714159..172306  bpPrimer
HM2413121Dinucleotide(TG)91893..110305  bpPrimer
HM2413151Dinucleotide(CT)612139..150311  bpPrimer
HM2413152Dinucleotide(CA)816161..176311  bpPrimer
HM2413081Dinucleotide(AC)91864..81381  bpPrimer
HM2413082Dinucleotide(AC)612196..207381  bpPrimer
HM2413083Dinucleotide(AC)816283..298381  bpPrimer
HM2413291Dinucleotide(AC)612264..275431  bpPrimer
HM2413292Dinucleotide(AC)612290..301431  bpPrimer
HM2413293Trinucleotide(CCT)515339..353431  bpPrimer
HM2412821Dinucleotide(TG)1632195..226452  bpPrimer
HM2412822Dinucleotide(GT)1734343..376452  bpPrimer
HM2412391Dinucleotide(CA)612160..171296  bpPrimer
HM2412911Dinucleotide(AC)1836136..171309  bpPrimer
HM2413391Mononucleotide(C)1010377..386499  bpPrimer
HM2413041Dinucleotide(AC)1224246..269328  bpPrimer
HM2412441Mononucleotide(T)1111317..327556  bpPrimer
HM2412442Dinucleotide(CA)714367..380556  bpPrimer
HM2413271Dinucleotide(AC)714278..291356  bpPrimer
HM2413161Dinucleotide(AC)81687..102691  bpPrimer
HM2413162Dinucleotide(CA)612551..562691  bpPrimer
HM2412531Dinucleotide(CA)612348..359592  bpPrimer
HM2412532Dinucleotide(CA)612468..479592  bpPrimer
HM2412451Dinucleotide(CA)1020205..224378  bpPrimer
HM2412452Mononucleotide(A)1616306..321378  bpPrimer
HM2413311Dinucleotide(CA)714206..219536  bpPrimer
KX0740651Dinucleotide(AC)1428151..178328  bpPrimer
KX0740641Dinucleotide(TG)1428151..178328  bpPrimer
KX0740661Mononucleotide(T)1010139..148330  bpPrimer
KX0740662Dinucleotide(GT)1530151..180330  bpPrimer
KX0740591Dinucleotide(AC)612138..149326  bpPrimer
KX0740592Dinucleotide(CA)1326151..176326  bpPrimer
KX0740593Mononucleotide(G)1212207..218326  bpPrimer
KX0740741Composite(TTTC)8(TGTC)760151..210332  bpPrimer
KX0740751Tetranucleotide(CTTT)1352151..202352  bpPrimer
KX0740631Dinucleotide(TG)1122151..172322  bpPrimer
KX0740761Hexanucleotide(TGAATC)530151..180330  bpPrimer
KX0740731Tetranucleotide(TAGA)37148151..298448  bpPrimer
KX0740711Tetranucleotide(CAAG)520102..121344  bpPrimer
KX0740712Tetranucleotide(CAGG)1144151..194344  bpPrimer
KX0740671Dinucleotide(TC)1326151..176326  bpPrimer
KX0740701Trinucleotide(GCT)927151..177327  bpPrimer
KX0740611Dinucleotide(CT)1224151..174324  bpPrimer
KX0740601Dinucleotide(AG)1122151..172322  bpPrimer
KX0740691Dinucleotide(CA)1632151..182332  bpPrimer
KX0740621Dinucleotide(CA)1122151..172322  bpPrimer
KX0740681Dinucleotide(AG)1122151..172322  bpPrimer
KX0740682Dinucleotide(GA)1020174..193322  bpPrimer
KX0740721Tetranucleotide(CAGA)728151..178328  bpPrimer
 
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