Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Sillago parvisquamis [11]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB7789481Dinucleotide(CA)816448..463683  bpPrimer
AB7789441Dinucleotide(GT)1836114..149347  bpPrimer
AB7789491Trinucleotide(TAT)1236297..332564  bpPrimer
AB7789401Mononucleotide(G)212113..33374  bpPrimer
AB7789402Dinucleotide(GT)3060150..209374  bpPrimer
AB7789391Dinucleotide(TG)3672171..242451  bpPrimer
AB7789471Dinucleotide(CA)71411..24245  bpPrimer
AB7789472Dinucleotide(GT)193892..129245  bpPrimer
AB7789411Dinucleotide(GT)1122216..237450  bpPrimer
AB7789421Dinucleotide(GT)1836224..259410  bpPrimer
AB7789461Dinucleotide(AC)1632148..179394  bpPrimer
AB7789451Dinucleotide(CA)204086..125246  bpPrimer
AB7789431Dinucleotide(AC)3162207..268498  bpPrimer
 
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