Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Siganus fuscescens [65]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JX9973801Dinucleotide(CT)612298..309723  bpPrimer
JX9973802Composite(CT)6(CA)1032346..377723  bpPrimer
JX9973761Dinucleotide(CA)612216..227500  bpPrimer
JX9973762Dinucleotide(AC)3672229..300500  bpPrimer
FJ9756141Dinucleotide(CT)204062..101283  bpPrimer
FJ9756041Dinucleotide(GT)1632161..192288  bpPrimer
JX9973731Dinucleotide(CT)1428181..208254  bpPrimer
FJ9756101Dinucleotide(AC)193846..83326  bpPrimer
JX9973861Dinucleotide(AG)265287..138296  bpPrimer
JX9973862Dinucleotide(GT)816278..293296  bpPrimer
FJ9756121Dinucleotide(AC)612273..284372  bpPrimer
JX9973771Mononucleotide(A)1414253..266435  bpPrimer
JX9973772Dinucleotide(CT)2550386..435435  bpPrimer
FJ9756081Dinucleotide(AG)81625..40212  bpPrimer
JX9973811Dinucleotide(GA)1122179..200697  bpPrimer
JX9973812Dinucleotide(TG)2448533..580697  bpPrimer
JX9973813Dinucleotide(GT)2040658..697697  bpPrimer
JX9973751Dinucleotide(CA)275422..75522  bpPrimer
FJ9756181Dinucleotide(AC)153083..112355  bpPrimer
JX9973781Trinucleotide(CTT)824105..128606  bpPrimer
JX9973741Dinucleotide(CA)255070..119167  bpPrimer
FJ9756091Dinucleotide(TC)2856236..291327  bpPrimer
JX9877891Composite(AC)10(CA)226434..97692  bpPrimer
JX9877892Dinucleotide(GT)816571..586692  bpPrimer
JX9973841Composite(TG)19(AG)75246..97507  bpPrimer
FJ9756131Dinucleotide(TG)3264143..206265  bpPrimer
FJ9756071Tetranucleotide(AAAG)176869..136270  bpPrimer
FJ9756051Composite(AC)10(A)1030240..269573  bpPrimer
JX9973791Dinucleotide(CT)1020257..276474  bpPrimer
FJ9756151Dinucleotide(AC)714162..175305  bpPrimer
FJ9756161Dinucleotide(GT)1632121..152312  bpPrimer
JX9973821Dinucleotide(CA)1122258..279519  bpPrimer
FJ9756171Dinucleotide(TG)2142336..377444  bpPrimer
JX9973831Dinucleotide(TG)244885..132353  bpPrimer
JX9973851Dinucleotide(CA)2856293..348422  bpPrimer
KF7737501Dinucleotide(GT)336675..140233  bpPrimer
KF7737561Dinucleotide(GT)2448302..349528  bpPrimer
KF7737562Dinucleotide(GT)1632352..383528  bpPrimer
KF7737491Dinucleotide(GT)142850..77298  bpPrimer
KF7737492Dinucleotide(GT)71488..101298  bpPrimer
KF7737493Dinucleotide(AG)612196..207298  bpPrimer
KF7737494Dinucleotide(AG)714212..225298  bpPrimer
KF7737495Composite(TG)7(AG)728242..269298  bpPrimer
KF7737581Dinucleotide(AG)714308..321514  bpPrimer
KF7737582Dinucleotide(GA)3366323..388514  bpPrimer
KF7737521Dinucleotide(TG)173473..106458  bpPrimer
KF7737522Trinucleotide(TCC)1030197..226458  bpPrimer
KF7737571Mononucleotide(A)13132..14324  bpPrimer
KF7737572Dinucleotide(TG)1632221..252324  bpPrimer
KF7737551Composite(GT)19(GA)65062..111486  bpPrimer
KF7737541Dinucleotide(AG)714183..196577  bpPrimer
KF7737542Composite(AG)23(TG)1372199..270577  bpPrimer
KF7737511Dinucleotide(AG)2754226..279490  bpPrimer
KF7737531Dinucleotide(GT)816426..441610  bpPrimer
KJ7013441Dinucleotide(TG)265249..100276  bpPrimer
KJ7013341Mononucleotide(T)101099..108318  bpPrimer
KJ7013342Dinucleotide(TG)918165..182318  bpPrimer
KJ7013343Dinucleotide(GT)1428184..211318  bpPrimer
KJ7013481Dinucleotide(GT)183698..133314  bpPrimer
KJ7013482Dinucleotide(GT)3264146..209314  bpPrimer
KJ7013451Dinucleotide(GT)377465..138349  bpPrimer
KJ7013421Composite(GA)23(GT)29104123..226366  bpPrimer
KJ7013422Dinucleotide(GT)1530229..258366  bpPrimer
KJ7013423Dinucleotide(TG)1428264..291366  bpPrimer
KJ7013351Dinucleotide(AG)438658..143254  bpPrimer
KJ7013352Dinucleotide(TG)1836151..186254  bpPrimer
KJ7013353Mononucleotide(T)1414229..242254  bpPrimer
KJ7013471Dinucleotide(GT)2040137..176332  bpPrimer
KJ7013431Dinucleotide(CT)2754140..193272  bpPrimer
KJ7013411Dinucleotide(GA)193854..91264  bpPrimer
KJ7013371Dinucleotide(GT)53106262..367674  bpPrimer
KJ7013381Dinucleotide(TC)2346131..176274  bpPrimer
KJ7013401Dinucleotide(GT)1122155..176341  bpPrimer
KJ7013402Dinucleotide(GT)1530179..208341  bpPrimer
KJ7013461Dinucleotide(GT)183678..113288  bpPrimer
KJ7013361Dinucleotide(AG)244866..113260  bpPrimer
KJ7013391Dinucleotide(GT)306075..134233  bpPrimer
KT3678001Trinucleotide(CTG)515301..315382  bpPrimer
KT3677961Dinucleotide(GA)1020271..290645  bpPrimer
KT3677962Dinucleotide(TG)1632430..461645  bpPrimer
KT3677941Dinucleotide(CT)714175..188422  bpPrimer
KT3677942Dinucleotide(CT)1122353..374422  bpPrimer
KT3677943Dinucleotide(AC)1632378..409422  bpPrimer
KT3678021Dinucleotide(AC)418284..165824  bpPrimer
KT3677991Trinucleotide(CAA)824377..400528  bpPrimer
 
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