Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Scomberomorus commerson [117]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AY7008161Dinucleotide(AC)1632483..514575  bpPrimer
FJ2349551Dinucleotide(AC)1734215..248327  bpPrimer
FJ2349561Dinucleotide(GA)714195..208492  bpPrimer
FJ2349562Dinucleotide(TG)4080229..308492  bpPrimer
AY7008421Dinucleotide(TG)1122235..256485  bpPrimer
AY7008422Dinucleotide(GT)2856282..337485  bpPrimer
AY7008423Dinucleotide(AG)714379..392485  bpPrimer
FJ2349461Dinucleotide(GT)1428138..165207  bpPrimer
FJ2349331Dinucleotide(AC)1938272..309721  bpPrimer
FJ2349541Dinucleotide(CA)122485..108629  bpPrimer
FJ2349542Mononucleotide(T)1616177..192629  bpPrimer
FJ2349543Mononucleotide(A)1717259..275629  bpPrimer
FJ2349544Mononucleotide(T)1212382..393629  bpPrimer
AY7008481Dinucleotide(TG)2856458..513579  bpPrimer
AY7008482Dinucleotide(GT)2550515..564579  bpPrimer
FJ2349411Dinucleotide(CA)2652311..362437  bpPrimer
AY7008081Dinucleotide(AC)2244138..181358  bpPrimer
AY7008291Dinucleotide(AC)173429..62247  bpPrimer
AY7008292Dinucleotide(AC)91865..82247  bpPrimer
AY7008141Dinucleotide(GT)54108172..279399  bpPrimer
FJ2349421Dinucleotide(TG)1122145..166255  bpPrimer
AY7008211Dinucleotide(TG)1530143..172274  bpPrimer
FJ2349361Dinucleotide(GT)1020267..286538  bpPrimer
FJ2349362Dinucleotide(GT)1326289..314538  bpPrimer
FJ2349363Dinucleotide(TG)3672336..407538  bpPrimer
AY7008201Dinucleotide(TG)2448143..190319  bpPrimer
AY7008101Dinucleotide(CA)2346268..313395  bpPrimer
FJ2349521Dinucleotide(CA)1734130..163225  bpPrimer
FJ2349431Dinucleotide(CA)1734167..200384  bpPrimer
AY7008311Dinucleotide(TC)193846..83291  bpPrimer
AY7008312Dinucleotide(TC)234696..141291  bpPrimer
AY7008371Dinucleotide(GT)816323..338340  bpPrimer
FJ2349301Dinucleotide(TG)918252..269413  bpPrimer
FJ2349381Dinucleotide(GT)91884..101385  bpPrimer
FJ2349382Dinucleotide(GT)918104..121385  bpPrimer
FJ2349383Dinucleotide(GT)1122258..279385  bpPrimer
AY7008241Dinucleotide(TG)91847..64155  bpPrimer
FJ2349321Dinucleotide(GT)1122387..408524  bpPrimer
FJ2349322Dinucleotide(TG)612410..421524  bpPrimer
FJ2349291Trinucleotide(TGT)515228..242525  bpPrimer
FJ2349601Dinucleotide(AC)316277..138322  bpPrimer
AY7008391Dinucleotide(GT)4794140..233347  bpPrimer
AY7008392Dinucleotide(TG)3366244..309347  bpPrimer
FJ2349341Dinucleotide(GT)1734170..203375  bpPrimer
AY7008121Dinucleotide(AG)1836141..176341  bpPrimer
AY7008261Dinucleotide(AC)153053..82218  bpPrimer
AY7008381Dinucleotide(GT)714203..216341  bpPrimer
AY7008331Dinucleotide(TG)112255..76318  bpPrimer
AY7008332Dinucleotide(TG)714112..125318  bpPrimer
AY7008333Dinucleotide(TG)918134..151318  bpPrimer
AY7008334Dinucleotide(GT)3366157..222318  bpPrimer
AY7008151Dinucleotide(TG)918138..155263  bpPrimer
AY7008231Dinucleotide(CA)71447..60143  bpPrimer
AY7008232Dinucleotide(CA)173462..95143  bpPrimer
FJ2349401Dinucleotide(CA)1530221..250323  bpPrimer
FJ2349402Dinucleotide(CA)1224253..276323  bpPrimer
FJ2349571Dinucleotide(TG)511022..103237  bpPrimer
AY7008301Dinucleotide(AC)2142151..192277  bpPrimer
AY7008131Dinucleotide(CA)2040291..330367  bpPrimer
AY7008091Dinucleotide(AC)1836143..178439  bpPrimer
FJ2349441Dinucleotide(CA)1734216..249366  bpPrimer
FJ2349371Dinucleotide(AC)102018..37242  bpPrimer
FJ2349372Dinucleotide(AC)61240..51242  bpPrimer
AY7008221Dinucleotide(GT)306041..100120  bpPrimer
FJ2349311Mononucleotide(A)1111332..342452  bpPrimer
FJ2349451Dinucleotide(TG)816174..189234  bpPrimer
FJ2349491Dinucleotide(TC)71436..49265  bpPrimer
FJ2349492Dinucleotide(TC)71452..65265  bpPrimer
FJ2349493Dinucleotide(TG)612127..138265  bpPrimer
AY7008411Dinucleotide(AG)5010048..147459  bpPrimer
FJ2349481Dinucleotide(CA)2652181..232355  bpPrimer
FJ2349531Dinucleotide(AC)142851..78384  bpPrimer
AY7008401Dinucleotide(CA)214232..73437  bpPrimer
AY7008402Dinucleotide(AC)367275..146437  bpPrimer
FJ2349511Dinucleotide(AC)173462..95322  bpPrimer
FJ2349512Dinucleotide(CA)112297..118322  bpPrimer
AY7008361Dinucleotide(GT)816158..173340  bpPrimer
AY7008362Dinucleotide(GT)714186..199340  bpPrimer
AY7008363Dinucleotide(GT)1020220..239340  bpPrimer
AY7008364Dinucleotide(GT)4794247..340340  bpPrimer
AY7008471Dinucleotide(TG)58116131..246577  bpPrimer
AY7008472Dinucleotide(TG)58116256..371577  bpPrimer
AY7008473Dinucleotide(TG)1734400..433577  bpPrimer
AY7008474Dinucleotide(TG)918444..461577  bpPrimer
AY7008475Dinucleotide(TG)1938512..549577  bpPrimer
FJ2349591Dinucleotide(CA)1020201..220781  bpPrimer
AY7008461Dinucleotide(CT)2550267..316571  bpPrimer
AY7008462Dinucleotide(CA)816343..358571  bpPrimer
FJ2349391Dinucleotide(CA)918147..164258  bpPrimer
FJ2349351Dinucleotide(AC)224499..142368  bpPrimer
AY7008271Dinucleotide(GA)2754143..196229  bpPrimer
AY7008491Dinucleotide(AC)1122121..142605  bpPrimer
AY7008492Dinucleotide(CA)714186..199605  bpPrimer
AY7008493Dinucleotide(AC)714306..319605  bpPrimer
AY7008451Dinucleotide(AC)2142336..377562  bpPrimer
AY7008452Dinucleotide(CA)918401..418562  bpPrimer
FJ2349611Dinucleotide(TG)224440..83167  bpPrimer
AY7008111Dinucleotide(TG)1734241..274362  bpPrimer
AY7008191Dinucleotide(GT)1938490..527600  bpPrimer
FJ2349581Dinucleotide(GA)1122191..212439  bpPrimer
FJ2349582Dinucleotide(TG)612366..377439  bpPrimer
FJ2349583Mononucleotide(T)1111412..422439  bpPrimer
AY7008431Dinucleotide(CA)255088..137502  bpPrimer
AY7008181Dinucleotide(TG)204091..130210  bpPrimer
AY7008341Dinucleotide(GT)81631..46331  bpPrimer
AY7008342Dinucleotide(CT)918224..241331  bpPrimer
AY7008343Dinucleotide(GT)3264243..306331  bpPrimer
AY7008344Dinucleotide(TG)612308..319331  bpPrimer
AY7008441Dinucleotide(TG)2244181..224561  bpPrimer
AY7008442Dinucleotide(TG)1428364..391561  bpPrimer
AY7008443Dinucleotide(TG)1938450..487561  bpPrimer
AY7008351Dinucleotide(TG)3774211..284332  bpPrimer
AY7008281Dinucleotide(AC)153029..58231  bpPrimer
AY7008282Dinucleotide(AC)193861..98231  bpPrimer
FJ2349471Dinucleotide(AC)1122194..215523  bpPrimer
FJ2349472Dinucleotide(CA)612217..228523  bpPrimer
FJ2349473Dinucleotide(CA)2550241..290523  bpPrimer
AY7008251Dinucleotide(AC)367284..155157  bpPrimer
AY7008321Dinucleotide(TG)2652191..242304  bpPrimer
KP1206921Tetranucleotide(TCTG)83272..103157  bpPrimer
KP1206901Dinucleotide(TC)112228..49296  bpPrimer
KP1206902Mononucleotide(A)1515125..139296  bpPrimer
KP1206903Mononucleotide(T)1515160..174296  bpPrimer
KP1206891Dinucleotide(AC)153049..78195  bpPrimer
KP1206881c*(AC)9(C)10*2799..125216  bpPrimer
KP1206851Dinucleotide(TG)2040188..227364  bpPrimer
KP1206871Dinucleotide(GT)81612..27377  bpPrimer
KP1206872Dinucleotide(TA)61241..52377  bpPrimer
KP1206873Dinucleotide(TC)816185..200377  bpPrimer
KP1206911Dinucleotide(GT)102074..93160  bpPrimer
KP1206861Dinucleotide(CG)81619..34382  bpPrimer
KP1206862Dinucleotide(AG)612149..160382  bpPrimer
KP1206831Dinucleotide(AC)91840..57430  bpPrimer
KP1206832Dinucleotide(AG)714298..311430  bpPrimer
KP1206821Dinucleotide(GT)71428..4195  bpPrimer
KP1206841Dinucleotide(AG)81656..71127  bpPrimer
MT8954961Dinucleotide(GT)918135..152263  bpPrimer
MT8954921Dinucleotide(AC)2346137..182318  bpPrimer
MT8954901Dinucleotide(AC)1326146..171318  bpPrimer
MT8954861Dinucleotide(CA)918178..195309  bpPrimer
MT8954911Pentanucleotide(ATACT)525186..210329  bpPrimer
MT8954851Trinucleotide(GAG)721143..163278  bpPrimer
MT8954761Dinucleotide(CA)71482..95349  bpPrimer
MT8954821Trinucleotide(AAC)51573..87134  bpPrimer
MT8954881Dinucleotide(CA)918111..128228  bpPrimer
MT8954721Dinucleotide(TG)1734136..169250  bpPrimer
MT8954941Pentanucleotide(GTTTA)1680157..236358  bpPrimer
MT8954951Dinucleotide(TG)918116..133248  bpPrimer
MT8954661Dinucleotide(AC)91890..107250  bpPrimer
MT8954791Dinucleotide(TG)102061..80248  bpPrimer
MT8954741Dinucleotide(CA)816129..144250  bpPrimer
MT8954931Dinucleotide(CA)1020147..166269  bpPrimer
MT8954681Dinucleotide(TG)1122156..177275  bpPrimer
MT8954801Dinucleotide(GT)714153..166288  bpPrimer
MT8954731Dinucleotide(AC)122491..114230  bpPrimer
MT8954871Dinucleotide(GA)183684..119258  bpPrimer
MT8954781Dinucleotide(AC)102080..99249  bpPrimer
MT8954782Mononucleotide(A)1010164..173249  bpPrimer
MT8954841Trinucleotide(TAT)515136..150248  bpPrimer
MT8954711Dinucleotide(TG)163248..79200  bpPrimer
MT8954751Dinucleotide(GT)112297..118220  bpPrimer
MT8954811Dinucleotide(CA)1734154..187318  bpPrimer
MT8954831Trinucleotide(CTC)515137..151258  bpPrimer
MT8954891Dinucleotide(CA)1020153..172290  bpPrimer
MT8954651Dinucleotide(AC)142885..112160  bpPrimer
MT8954671Trinucleotide(ATT)113373..105280  bpPrimer
MT8954701Dinucleotide(AC)204080..119250  bpPrimer
MT8954771Dinucleotide(GT)1530174..203382  bpPrimer
MT8954691Dinucleotide(TC)102078..97200  bpPrimer
 
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