Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Scomber japonicus [92]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JN6566431Dinucleotide(TC)3060128..187424  bpPrimer
JN6566432Dinucleotide(GT)1836379..414424  bpPrimer
JN6566601Mononucleotide(C)171743..59309  bpPrimer
JN6566602Dinucleotide(AG)1530267..296309  bpPrimer
AB3048311Dinucleotide(CA)193839..7678  bpPrimer
JN6566401Dinucleotide(AG)1224210..233300  bpPrimer
JN6566411Dinucleotide(AG)295847..104356  bpPrimer
EF1097891Dinucleotide(GT)132628..5380  bpPrimer
JN6566331Trinucleotide(CAG)927126..152273  bpPrimer
AB3048321Dinucleotide(TG)91899..116130  bpPrimer
FJ7633441Dinucleotide(AT)61253..64212  bpPrimer
EF1097841Dinucleotide(TG)193842..79131  bpPrimer
JN6566511Dinucleotide(GA)2652178..229383  bpPrimer
JN6566551Dinucleotide(AC)6129..20303  bpPrimer
JN6566552Dinucleotide(AC)163223..54303  bpPrimer
JN6566553Dinucleotide(CT)612195..206303  bpPrimer
JN6566554Dinucleotide(CT)612229..240303  bpPrimer
JN6566531Dinucleotide(CT)918260..277340  bpPrimer
JN6566532Dinucleotide(CT)714280..293340  bpPrimer
JN6566533Dinucleotide(TC)918295..312340  bpPrimer
JN6566451Dinucleotide(CA)816257..272427  bpPrimer
JN6566541Dinucleotide(TC)1224245..268378  bpPrimer
JN6566501Tetranucleotide(CAAA)52059..78245  bpPrimer
EF1097901Dinucleotide(CA)81624..3975  bpPrimer
EF1097902Dinucleotide(CA)81642..5775  bpPrimer
AB3048261Dinucleotide(AG)408067..146271  bpPrimer
AB3048281Dinucleotide(TA)132629..54142  bpPrimer
AB3048282Dinucleotide(CA)61264..75142  bpPrimer
AB3048283Dinucleotide(GA)214292..133142  bpPrimer
AB3048301Dinucleotide(CA)132621..46156  bpPrimer
JN6566371Dinucleotide(TG)816156..171427  bpPrimer
EF1097861Dinucleotide(GT)102010..29152  bpPrimer
JN6566381Dinucleotide(AG)816131..146216  bpPrimer
JN6566311Dinucleotide(CT)173447..80284  bpPrimer
EF1097831Dinucleotide(TG)224423..6690  bpPrimer
EF1097832Mononucleotide(T)101081..9090  bpPrimer
JN6566491Dinucleotide(GT)2142127..168390  bpPrimer
AB3048251Dinucleotide(GA)81681..96203  bpPrimer
JN6566441Dinucleotide(GA)714114..127375  bpPrimer
JN6566442Dinucleotide(GA)816138..153375  bpPrimer
JN6566443Dinucleotide(GA)1632156..187375  bpPrimer
EF1097821Dinucleotide(TG)11228..29160  bpPrimer
AB3048291Dinucleotide(CT)163261..92137  bpPrimer
AB3048292Dinucleotide(TC)714106..119137  bpPrimer
AB3048331Dinucleotide(TG)102090..109184  bpPrimer
JN6566581Dinucleotide(AG)183627..62333  bpPrimer
EF1097851Dinucleotide(AC)112234..5579  bpPrimer
JN6566341Dinucleotide(AG)112216..37288  bpPrimer
JN6566342Dinucleotide(GA)173445..78288  bpPrimer
AB3048271Composite(TG)9(AG)732118..149194  bpPrimer
AB3048272Dinucleotide(GA)714161..174194  bpPrimer
JN6566481Dinucleotide(AC)816245..260416  bpPrimer
JN6566521Dinucleotide(TC)91822..39336  bpPrimer
JN6566522Dinucleotide(TC)122470..93336  bpPrimer
JN6566591Dinucleotide(TC)2142313..354427  bpPrimer
JN6566391Dinucleotide(AG)714144..157326  bpPrimer
JN6566392Dinucleotide(AG)816162..177326  bpPrimer
JN6566361Mononucleotide(T)101052..61212  bpPrimer
JN6566362Dinucleotide(GA)1734123..156212  bpPrimer
EF1097881Dinucleotide(TG)224435..7884  bpPrimer
JN6566321Dinucleotide(CT)612285..296343  bpPrimer
JN6566322Dinucleotide(CT)612305..316343  bpPrimer
JN6566571Dinucleotide(CT)6127..18298  bpPrimer
JN6566572Dinucleotide(CT)183661..96298  bpPrimer
JN6566573Dinucleotide(GT)714277..290298  bpPrimer
JN6566561Dinucleotide(CT)71416..29219  bpPrimer
JN6566562Dinucleotide(CT)132632..57219  bpPrimer
JN6566563Composite(CT)16(GT)74666..111219  bpPrimer
JN6566461Dinucleotide(CT)204059..98224  bpPrimer
JN6566462Dinucleotide(TC)816100..115224  bpPrimer
JN6566471Dinucleotide(AG)1530259..288427  bpPrimer
JN6566421Dinucleotide(GA)2346193..238320  bpPrimer
JN6566422Dinucleotide(GA)918241..258320  bpPrimer
KY0421071Dinucleotide(TG)816147..162198  bpPrimer
KY0421141Dinucleotide(CT)132650..75167  bpPrimer
KY0421101Dinucleotide(GA)714213..226317  bpPrimer
KY0421102Dinucleotide(GA)612241..252317  bpPrimer
KY0421103Dinucleotide(GA)612255..266317  bpPrimer
KY0421111Dinucleotide(GA)71496..109242  bpPrimer
KY0421112Dinucleotide(AG)714111..124242  bpPrimer
KY0421151Dinucleotide(CT)71449..62209  bpPrimer
KY0421061Dinucleotide(AG)1122112..133183  bpPrimer
KY0421081Dinucleotide(TC)61253..64241  bpPrimer
KY0421082Dinucleotide(CT)61266..77241  bpPrimer
KY0421083Dinucleotide(CT)81692..107241  bpPrimer
JN6566591Dinucleotide(TC)2142313..354427  bpPrimer
JN6566391Dinucleotide(AG)714144..157326  bpPrimer
JN6566392Dinucleotide(AG)816162..177326  bpPrimer
JN6566521Dinucleotide(TC)91822..39336  bpPrimer
JN6566522Dinucleotide(TC)122470..93336  bpPrimer
JN6566381Dinucleotide(AG)816131..146216  bpPrimer
JN6566511Dinucleotide(GA)2652178..229383  bpPrimer
JN6566341Dinucleotide(AG)112216..37288  bpPrimer
JN6566342Dinucleotide(GA)173445..78288  bpPrimer
JN6566421Dinucleotide(GA)2346193..238320  bpPrimer
JN6566422Dinucleotide(GA)918241..258320  bpPrimer
JN6566561Dinucleotide(CT)71416..29219  bpPrimer
JN6566562Dinucleotide(CT)132632..57219  bpPrimer
JN6566563Composite(CT)16(GT)74666..111219  bpPrimer
JN6566601Mononucleotide(C)171743..59309  bpPrimer
JN6566602Dinucleotide(AG)1530267..296309  bpPrimer
JN6566541Dinucleotide(TC)1224245..268378  bpPrimer
JN6566401Dinucleotide(AG)1224210..233300  bpPrimer
JN6566431Dinucleotide(TC)3060128..187424  bpPrimer
JN6566432Dinucleotide(GT)1836379..414424  bpPrimer
JN6566331Trinucleotide(CAG)927126..152273  bpPrimer
JN6566581Dinucleotide(AG)183627..62333  bpPrimer
JN6566491Dinucleotide(GT)2142127..168390  bpPrimer
JN6566551Dinucleotide(AC)6129..20303  bpPrimer
JN6566552Dinucleotide(AC)163223..54303  bpPrimer
JN6566553Dinucleotide(CT)612195..206303  bpPrimer
JN6566554Dinucleotide(CT)612229..240303  bpPrimer
JN6566451Dinucleotide(CA)816257..272427  bpPrimer
JN6566311Dinucleotide(CT)173447..80284  bpPrimer
JN6566371Dinucleotide(TG)816156..171427  bpPrimer
JN6566471Dinucleotide(AG)1530259..288427  bpPrimer
JN6566481Dinucleotide(AC)816245..260416  bpPrimer
JN6566361Mononucleotide(T)101052..61212  bpPrimer
JN6566362Dinucleotide(GA)1734123..156212  bpPrimer
JN6566501Tetranucleotide(CAAA)52059..78245  bpPrimer
JN6566321Dinucleotide(CT)612285..296343  bpPrimer
JN6566322Dinucleotide(CT)612305..316343  bpPrimer
JN6566441Dinucleotide(GA)714114..127375  bpPrimer
JN6566442Dinucleotide(GA)816138..153375  bpPrimer
JN6566443Dinucleotide(GA)1632156..187375  bpPrimer
JN6566461Dinucleotide(CT)204059..98224  bpPrimer
JN6566462Dinucleotide(TC)816100..115224  bpPrimer
JN6566411Dinucleotide(AG)295847..104356  bpPrimer
JN6566531Dinucleotide(CT)918260..277340  bpPrimer
JN6566532Dinucleotide(CT)714280..293340  bpPrimer
JN6566533Dinucleotide(TC)918295..312340  bpPrimer
JN6566571Dinucleotide(CT)6127..18298  bpPrimer
JN6566572Dinucleotide(CT)183661..96298  bpPrimer
JN6566573Dinucleotide(GT)714277..290298  bpPrimer
 
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