Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Schizopyge niger [12]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KC3392751Composite(GT)25(GA)7(GT)139064..153337  bpPrimer
KC3392752Composite(GA)6(GT)1032164..195337  bpPrimer
KC3392753Dinucleotide(GT)918206..223337  bpPrimer
KC3392754Composite(GT)10(GA)8(GT)1770226..295337  bpPrimer
KC3392821Dinucleotide(GT)306069..128284  bpPrimer
KC3392851Dinucleotide(AC)122441..64280  bpPrimer
KC3392852Dinucleotide(GA)2244197..240280  bpPrimer
KC3392831Dinucleotide(TG)714153..166541  bpPrimer
KC3392832Dinucleotide(TG)918445..462541  bpPrimer
KC3392833Dinucleotide(TG)816465..480541  bpPrimer
KC3392841Composite(GT)10(GA)63247..78396  bpPrimer
KC3392842Dinucleotide(GT)153097..126396  bpPrimer
KC3392843Composite(GT)10(GA)734145..178396  bpPrimer
KC3392844Dinucleotide(GT)1530199..228396  bpPrimer
KC3392845Dinucleotide(TG)612230..241396  bpPrimer
KC3392846Dinucleotide(GT)1326259..284396  bpPrimer
KC3392847Composite(GT)10(GA)938301..338396  bpPrimer
KC3392771Dinucleotide(TG)2244940..9831076  bpPrimer
KC3392772Dinucleotide(GA)816986..10011076  bpPrimer
KC3392761Dinucleotide(AC)122455..78306  bpPrimer
KC3392762Dinucleotide(GA)2244211..254306  bpPrimer
KC3392791Mononucleotide(T)1010268..277501  bpPrimer
KC3392801Mononucleotide(A)101013..22562  bpPrimer
KC3392811Dinucleotide(TG)1734178..211274  bpPrimer
 
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