Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Scatophagus argus [76]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
HM5909101Dinucleotide(GT)265276..127244  bpPrimer
JX8966691Tetranucleotide(TGTC)624115..138158  bpPrimer
HM5909281Dinucleotide(TG)336661..126276  bpPrimer
HM5909282Dinucleotide(GT)816128..143276  bpPrimer
HM5909071Dinucleotide(AC)102068..87206  bpPrimer
HM5908991Dinucleotide(TG)102095..114243  bpPrimer
HM5908931Dinucleotide(AC)214293..134232  bpPrimer
HM5909081Dinucleotide(GT)1836132..167207  bpPrimer
HM5909141Trinucleotide(CTC)721143..163283  bpPrimer
HM5908981Dinucleotide(CA)112277..98275  bpPrimer
HM5908982Dinucleotide(CT)1020105..124275  bpPrimer
HM5909321Dinucleotide(TC)1122154..175227  bpPrimer
HM5909111Dinucleotide(TG)918143..160220  bpPrimer
HM5909171Trinucleotide(AAC)1030144..173253  bpPrimer
HM5909191Dinucleotide(CA)612171..182322  bpPrimer
HM5909192Dinucleotide(AG)1326218..243322  bpPrimer
JX8966711Tetranucleotide(AAAG)145666..121258  bpPrimer
HM5909011Dinucleotide(CT)612121..132208  bpPrimer
HM5908951Dinucleotide(GT)918108..125234  bpPrimer
JX8966701Trinucleotide(TTC)133974..112132  bpPrimer
HM5909241Dinucleotide(TG)1938106..143233  bpPrimer
HM5909131Dinucleotide(TG)1224141..164249  bpPrimer
HM5909031Dinucleotide(CA)2448156..203345  bpPrimer
HM5909161Dinucleotide(TG)816155..170202  bpPrimer
HM5909121Dinucleotide(CA)142827..54261  bpPrimer
HM5909311Dinucleotide(AC)142894..121387  bpPrimer
HM5909312Dinucleotide(CA)1938240..277387  bpPrimer
JX8966761Tetranucleotide(GTCC)52043..62194  bpPrimer
HM5908961Dinucleotide(AC)1224162..185269  bpPrimer
HM5909091Dinucleotide(GT)612107..118207  bpPrimer
HM5909061Dinucleotide(GT)224421..64230  bpPrimer
HM5909041Dinucleotide(CA)816120..135220  bpPrimer
JX8966791Trinucleotide(TCA)1030149..178199  bpPrimer
JX8966721Trinucleotide(CAG)113359..91193  bpPrimer
HM5909201Dinucleotide(CA)1122126..147240  bpPrimer
JX8966751Trinucleotide(AGG)61854..71145  bpPrimer
JX8966781Dinucleotide(AC)1632147..178229  bpPrimer
JX8966731Trinucleotide(GTT)721118..138212  bpPrimer
HM5909231Dinucleotide(CA)61239..50196  bpPrimer
HM5909001Dinucleotide(TG)71460..73200  bpPrimer
HM5909271Dinucleotide(GT)81695..110317  bpPrimer
HM5909181Trinucleotide(CAA)721146..166376  bpPrimer
HM5909182Dinucleotide(AC)1326308..333376  bpPrimer
HM5909183Dinucleotide(CA)816335..350376  bpPrimer
HM5909331Dinucleotide(TC)204070..109375  bpPrimer
HM5909332Dinucleotide(TC)612223..234375  bpPrimer
HM5909333Dinucleotide(TC)714245..258375  bpPrimer
HM5909334Dinucleotide(TC)1938261..298375  bpPrimer
JX8966741Trinucleotide(AAC)927107..133170  bpPrimer
JX8966771Trinucleotide(TGC)721122..142174  bpPrimer
HM5909261Dinucleotide(AC)91890..107335  bpPrimer
HM5909262Dinucleotide(AC)714282..295335  bpPrimer
HM5909301Dinucleotide(AC)1224133..156214  bpPrimer
HM5909211Trinucleotide(ACA)82470..93273  bpPrimer
JX8966801Tetranucleotide(GTTT)52047..66201  bpPrimer
HM5909151Trinucleotide(GAC)515139..153247  bpPrimer
HM5909291Dinucleotide(TC)1734115..148260  bpPrimer
HM5909251Dinucleotide(AC)122485..108324  bpPrimer
HM5908941Dinucleotide(AC)714184..197247  bpPrimer
HM5909221Dinucleotide(TG)214262..103217  bpPrimer
HM5909021Dinucleotide(TG)1836107..142259  bpPrimer
HM5909022Mononucleotide(G)1111208..218259  bpPrimer
MT1102001Trinucleotide(GAA)51533..47197  bpPrimer
MT1102171Dinucleotide(AC)183682..117145  bpPrimer
MT1102051Dinucleotide(AC)112268..89183  bpPrimer
MT1102191Dinucleotide(CA)2142132..173227  bpPrimer
MT1101991Dinucleotide(TG)183692..127212  bpPrimer
MT1102091Dinucleotide(AC)153030..59161  bpPrimer
MT1102041Dinucleotide(GT)102050..69232  bpPrimer
MT1102181Trinucleotide(ACA)72139..59176  bpPrimer
MT1102061Dinucleotide(TG)1428155..182212  bpPrimer
MT1102101Trinucleotide(TTG)51553..67144  bpPrimer
MT1102011Trinucleotide(GGC)618135..152178  bpPrimer
MT1101981Tetranucleotide(TGTC)520108..127241  bpPrimer
MT1102031Dinucleotide(AC)142823..50197  bpPrimer
MT1102141Dinucleotide(AC)224429..72173  bpPrimer
MT1102021Dinucleotide(AC)112227..48183  bpPrimer
MT1102161Tetranucleotide(TGTA)83285..116151  bpPrimer
MT1102131Trinucleotide(TAA)82448..71196  bpPrimer
MT1102071Dinucleotide(GT)1122107..128167  bpPrimer
MT1102081Dinucleotide(GT)102096..115139  bpPrimer
MT1102121Dinucleotide(TG)173466..99205  bpPrimer
MT1102151Tetranucleotide(CATC)93644..79232  bpPrimer
MT1102111Tetranucleotide(CAGA)62481..104226  bpPrimer
MT1101971Tetranucleotide(TAGA)1144160..203232  bpPrimer
 
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