Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Scarus rubroviolaceus [17]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EF0666231Tetranucleotide(CTAT)176876..143725  bpPrimer
EF0666211Tetranucleotide(TATC)1976396..471556  bpPrimer
EF0666171Tetranucleotide(TCCA)728138..165660  bpPrimer
EF0666172Mononucleotide(A)1010435..444660  bpPrimer
EF0666281Dinucleotide(TG)2652262..313870  bpPrimer
EF0666241Tetranucleotide(TATC)1144201..244640  bpPrimer
EF0666221Tetranucleotide(ATAG)832307..338970  bpPrimer
EF0666271Dinucleotide(TG)2550355..404959  bpPrimer
EF0666191Tetranucleotide(CATC)1040496..535573  bpPrimer
EF0666151Tetranucleotide(TGGA)72858..85561  bpPrimer
EF0666131Tetranucleotide(TTTC)1040567..606941  bpPrimer
EF0666161Tetranucleotide(GATG)83270..101542  bpPrimer
EF0666141Tetranucleotide(AAAG)728193..220634  bpPrimer
EF0666251Tetranucleotide(TATC)25100258..357531  bpPrimer
EF0666121Tetranucleotide(TCTT)1040241..280592  bpPrimer
EF0666261Dinucleotide(TG)1530431..460621  bpPrimer
EF0666201Tetranucleotide(AGCC)520290..3091047  bpPrimer
EF0666202Tetranucleotide(TCCA)1040319..3581047  bpPrimer
EF0666203Tetranucleotide(CCAT)728504..5311047  bpPrimer
EF0666181Tetranucleotide(GATG)936180..215513  bpPrimer
 
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