Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Scartelaos histophorus [17]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
HQ1285961Dinucleotide(AG)816133..148305  bpPrimer
HQ1285941Dinucleotide(GT)336649..114160  bpPrimer
HQ1285921Composite(AG)7(TG)195298..149314  bpPrimer
HQ1285922Dinucleotide(GC)714155..168314  bpPrimer
HQ1285923Dinucleotide(GT)1734177..210314  bpPrimer
HQ1285924Dinucleotide(GT)714251..264314  bpPrimer
HQ1285925Dinucleotide(TG)612266..277314  bpPrimer
HQ1285931Dinucleotide(TG)1632188..219355  bpPrimer
HQ1285851Dinucleotide(GT)816169..184328  bpPrimer
HQ1285852Dinucleotide(GC)714189..202328  bpPrimer
HQ1285981Dinucleotide(GA)8163..18287  bpPrimer
HQ1285982Dinucleotide(AG)612139..150287  bpPrimer
HQ1285911Dinucleotide(TG)102055..74160  bpPrimer
HQ1285912Dinucleotide(GT)81678..93160  bpPrimer
HQ1285951Composite(AG)23(TG)2698104..201318  bpPrimer
HQ1285971Dinucleotide(GT)2958100..157225  bpPrimer
HQ1285861Trinucleotide(GAG)51579..93336  bpPrimer
HQ1285841Composite(AG)12(TG)8401..40259  bpPrimer
HQ1285842Dinucleotide(TG)91847..64259  bpPrimer
HQ1285843Dinucleotide(TG)122473..96259  bpPrimer
HQ1285844Dinucleotide(TG)714111..124259  bpPrimer
HQ1285901Composite(AG)18(TG)258695..180264  bpPrimer
HQ1285902Dinucleotide(GT)816188..203264  bpPrimer
HQ1285891Dinucleotide(CT)1020142..161329  bpPrimer
HQ1285871Dinucleotide(GA)612192..203269  bpPrimer
 
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