Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Salvelinus fontinalis [22]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AY1681941Dinucleotide(CA)714131..144438  bpPrimer
AY1681942Tetranucleotide(ACTC)520186..205438  bpPrimer
AY1681943c*(TCAC)16(CA)7*75208..282438  bpPrimer
AY1681944Dinucleotide(CA)1530285..314438  bpPrimer
AY1681921Trinucleotide(GAT)164892..139399  bpPrimer
AY1681981Tetranucleotide(TAGA)832243..274520  bpPrimer
AY1681871Trinucleotide(TGA)515199..213374  bpPrimer
AY1681872Trinucleotide(GAT)515215..229374  bpPrimer
AY1681861Tetranucleotide(GTGC)1040215..254479  bpPrimer
AY1681862Dinucleotide(GT)714269..282479  bpPrimer
U503051Dinucleotide(CA)306055..114216  bpPrimer
AY1681901Trinucleotide(TGA)721112..132211  bpPrimer
AF1297881Dinucleotide(AC)1020417..436750  bpPrimer
AF1297882Dinucleotide(CA)612456..467750  bpPrimer
AY1681991Composite(ATCT)12(GTCT)1088229..316479  bpPrimer
AY1681881c*(TG)6(GTGC)11*53243..295399  bpPrimer
U503061Dinucleotide(TG)122435..58154  bpPrimer
U503031Dinucleotide(CA)81663..78150  bpPrimer
AF1297891Dinucleotide(AC)714422..435757  bpPrimer
AY1681951Trinucleotide(TGA)927104..130556  bpPrimer
U503021Dinucleotide(TG)61284..95242  bpPrimer
U503022Dinucleotide(TG)1428106..133242  bpPrimer
U503023Dinucleotide(TG)816136..151242  bpPrimer
U503024Dinucleotide(TG)612154..165242  bpPrimer
U503041Dinucleotide(CA)204053..92147  bpPrimer
AY1681931Trinucleotide(TGA)133958..96368  bpPrimer
AY1681911Trinucleotide(TCA)824167..190444  bpPrimer
AY1681891Trinucleotide(TGA)618242..259477  bpPrimer
AY1681971Tetranucleotide(ATAG)1768199..266661  bpPrimer
AY1681972Dinucleotide(CA)612489..500661  bpPrimer
AY1681973Dinucleotide(CA)714581..594661  bpPrimer
 
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