Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Rastrelliger kanagurta [53]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB6624021Dinucleotide(CA)6121..1251  bpPrimer
AB6621661Dinucleotide(CA)16321..3245  bpPrimer
KF6680071Dinucleotide(TG)214222..63130  bpPrimer
KF6680031Dinucleotide(CA)19389..46240  bpPrimer
AB6621441Dinucleotide(CA)61289..100260  bpPrimer
AB6621442Dinucleotide(CA)4080181..260260  bpPrimer
AB6626151Composite(CT)33(CA)9841..84133  bpPrimer
AB6626152Dinucleotide(CA)61295..106133  bpPrimer
AB6622571Dinucleotide(TC)255068..117118  bpPrimer
AB6624991Dinucleotide(GT)15301..3071  bpPrimer
KF6680081Dinucleotide(CA)214255..96170  bpPrimer
AB6627021Dinucleotide(TG)102041..6061  bpPrimer
AB6625931Dinucleotide(CA)9181..18203  bpPrimer
AB6625932Dinucleotide(CT)918104..121203  bpPrimer
AB6621071Dinucleotide(TG)346826..9394  bpPrimer
KF6680061Dinucleotide(GT)1734108..141226  bpPrimer
AB6620411Dinucleotide(AC)37741..74571  bpPrimer
AB6620412Dinucleotide(CT)612523..534571  bpPrimer
AB6620413Dinucleotide(CT)612536..547571  bpPrimer
AB6623441Dinucleotide(AC)91897..114313  bpPrimer
AB6623041Dinucleotide(AC)142843..7077  bpPrimer
AB6623781Dinucleotide(CA)20401..4076  bpPrimer
KF6680051Dinucleotide(TG)214224..65176  bpPrimer
AB6619821Dinucleotide(AC)61277..88120  bpPrimer
AB6619822Dinucleotide(AC)122497..120120  bpPrimer
AB6620861Dinucleotide(TG)71421..34105  bpPrimer
AB6621301Dinucleotide(CA)40801..80387  bpPrimer
AB6624731Mononucleotide(C)101055..64171  bpPrimer
AB6624732Dinucleotide(CA)469280..171171  bpPrimer
KF6680041Dinucleotide(CA)224449..92207  bpPrimer
AB6628231Dinucleotide(CA)24481..48146  bpPrimer
AB6620241Dinucleotide(CA)33661..66386  bpPrimer
AB6620242Dinucleotide(CT)61279..90386  bpPrimer
AB6620031Dinucleotide(CA)102039..5859  bpPrimer
KF6680021Trinucleotide(GGA)103063..92173  bpPrimer
KF6680022Mononucleotide(T)1111155..165173  bpPrimer
AB6628471Dinucleotide(CA)81650..6565  bpPrimer
AB6619561Dinucleotide(AC)142849..76121  bpPrimer
AB6619562Dinucleotide(CT)183686..121121  bpPrimer
AB6627241Dinucleotide(AC)112234..5556  bpPrimer
AB6620621Dinucleotide(CA)10201..2073  bpPrimer
AB6625731Dinucleotide(AC)816110..125125  bpPrimer
AB6622121Dinucleotide(AC)61223..3462  bpPrimer
KM1913461Tetranucleotide(CACT)145685..140242  bpPrimer
KM1913481Tetranucleotide(CTGA)83266..97186  bpPrimer
KM1913501Tetranucleotide(CACT)166480..143185  bpPrimer
KM1913471Tetranucleotide(GATT)728109..136205  bpPrimer
KM1913491Tetranucleotide(TTGA)936111..146238  bpPrimer
KM1913451Trinucleotide(GTA)92738..64176  bpPrimer
KM1913431Trinucleotide(CAG)82463..86214  bpPrimer
KM1913441Trinucleotide(CAT)82464..87258  bpPrimer
 
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