Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Rachycentron canadum [42]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AY7216661Dinucleotide(TC)1836119..154461  bpPrimer
AY8500141Composite(CA)10(CGCA)540389..428651  bpPrimer
AY7216641Trinucleotide(TTG)721232..252408  bpPrimer
AY7216651Dinucleotide(TG)918104..121319  bpPrimer
AY8500121Dinucleotide(GT)918360..377456  bpPrimer
AY7216781Dinucleotide(AC)61251..62478  bpPrimer
AY7216782Dinucleotide(CA)816103..118478  bpPrimer
AY8500211Dinucleotide(GT)3060353..412491  bpPrimer
AY7216721Dinucleotide(AC)112279..100450  bpPrimer
AY7216722Mononucleotide(A)1313409..421450  bpPrimer
AY7216811Dinucleotide(GT)122444..67350  bpPrimer
AY8500131Mononucleotide(A)1111156..166404  bpPrimer
AY8500132Dinucleotide(CA)1020326..345404  bpPrimer
AY7216821Dinucleotide(TG)1836424..459882  bpPrimer
AY8500101Dinucleotide(TC)1836124..159419  bpPrimer
AY8500151Dinucleotide(AC)714171..184379  bpPrimer
AY8500152Dinucleotide(GT)2040340..379379  bpPrimer
AY8500221Dinucleotide(AC)163255..86156  bpPrimer
AY7216711Tetranucleotide(GATA)3112478..201340  bpPrimer
AY7216741Dinucleotide(AC)91850..67472  bpPrimer
AY8500161Dinucleotide(CA)1224189..212450  bpPrimer
AY7216791Dinucleotide(AC)397886..163326  bpPrimer
AY7216751Dinucleotide(GT)1734146..179580  bpPrimer
AY8500181Dinucleotide(TG)1428257..284367  bpPrimer
AY7216681Tetranucleotide(TCTA)156046..105482  bpPrimer
AY8500111Dinucleotide(GT)1326155..180386  bpPrimer
AY8500112Dinucleotide(TG)612184..195386  bpPrimer
AY8500113Dinucleotide(TG)2856330..385386  bpPrimer
AY7216761Dinucleotide(GT)91894..111161  bpPrimer
AY7216731Dinucleotide(TG)2448109..156407  bpPrimer
AY7216732Dinucleotide(GT)612236..247407  bpPrimer
AY7216701Mononucleotide(C)1111334..344491  bpPrimer
AY7216771Dinucleotide(GT)816156..171426  bpPrimer
AY7216772Dinucleotide(AC)714365..378426  bpPrimer
AY8500091Tetranucleotide(ATCT)31124276..399428  bpPrimer
AY7216691c*(AGAC)6(AC)13*48297..344389  bpPrimer
AY8500081Tetranucleotide(AGAT)30120238..357576  bpPrimer
AY8500171Dinucleotide(CA)81653..68390  bpPrimer
AY8500172Dinucleotide(AG)816195..210390  bpPrimer
AY8500173Dinucleotide(AG)612213..224390  bpPrimer
AY8500174Tetranucleotide(AGGA)520285..304390  bpPrimer
AY7216671Dinucleotide(CA)816112..127466  bpPrimer
AY7216672Dinucleotide(AC)1734298..331466  bpPrimer
AY8500191Dinucleotide(CA)3774160..233484  bpPrimer
AY8500201Dinucleotide(GT)81628..43436  bpPrimer
AY8500202Dinucleotide(CA)816247..262436  bpPrimer
AY8500203Dinucleotide(GT)1836373..408436  bpPrimer
AY7216801Dinucleotide(AC)1224219..242422  bpPrimer
MF3468671Dinucleotide(TG)918102..119286  bpPrimer
MF3468672Dinucleotide(TG)1326185..210286  bpPrimer
MF3468621Dinucleotide(CA)3468167..234281  bpPrimer
MF3468601Dinucleotide(CA)234631..76463  bpPrimer
MF3468651Dinucleotide(CA)132662..87352  bpPrimer
MF3468661Dinucleotide(AC)2040296..335674  bpPrimer
MF3468631Dinucleotide(GT)816129..144301  bpPrimer
MF3468632Dinucleotide(GT)1122147..168301  bpPrimer
MF3468641Dinucleotide(CA)2040110..149378  bpPrimer
MF3468642Dinucleotide(AC)1326299..324378  bpPrimer
MF3468611Dinucleotide(GT)163287..118407  bpPrimer
 
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