Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Pristipomoides filamentosus [91]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
GQ9989821Trinucleotide(TCT)824131..154174  bpPrimer
GQ9989641Tetranucleotide(ACCA)1040169..208262  bpPrimer
GQ9989751Trinucleotide(GAG)113316..48173  bpPrimer
GQ9989631Tetranucleotide(CATC)728196..223370  bpPrimer
GQ9989881Tetranucleotide(TGGA)62459..82136  bpPrimer
GQ9989541Dinucleotide(AC)132643..68420  bpPrimer
GQ9989051Trinucleotide(ATG)824186..209255  bpPrimer
GQ9989701Dinucleotide(GA)816155..170326  bpPrimer
GQ9989651Tetranucleotide(GATG)72844..71237  bpPrimer
GQ9989421Dinucleotide(TG)112290..111112  bpPrimer
GQ9989241Dinucleotide(TC)918207..224553  bpPrimer
GQ9989471Trinucleotide(GAG)113316..48173  bpPrimer
GQ9989331Trinucleotide(CAG)618132..149233  bpPrimer
GQ9989171Trinucleotide(AGA)1339178..216301  bpPrimer
GQ9989141Trinucleotide(GGT)618380..397466  bpPrimer
GQ9989841Tetranucleotide(GGAT)728147..174370  bpPrimer
GQ9989151Tetranucleotide(ATCC)62453..76375  bpPrimer
GQ9989801Trinucleotide(GAG)7212..22286  bpPrimer
GQ9989071Dinucleotide(CA)91851..68192  bpPrimer
GQ9989441Trinucleotide(AAC)618238..255301  bpPrimer
GQ9989181Dinucleotide(CA)91851..68192  bpPrimer
GQ9989531Trinucleotide(CAC)618172..189225  bpPrimer
GQ9989341Trinucleotide(TGC)72183..103184  bpPrimer
GQ9989681Trinucleotide(AGC)61874..91111  bpPrimer
GQ9989481Tetranucleotide(GGAG)62480..103291  bpPrimer
GQ9989482Trinucleotide(AGG)515181..195291  bpPrimer
GQ9989101Tetranucleotide(ATGG)83298..129241  bpPrimer
GQ9989191Trinucleotide(GAG)927248..274308  bpPrimer
GQ9989521Dinucleotide(GT)1224161..184193  bpPrimer
GQ9989131Tetranucleotide(CTCA)104077..116256  bpPrimer
GQ9989111Tetranucleotide(TCAC)832189..220292  bpPrimer
GQ9989271Tetranucleotide(GATG)1456197..252263  bpPrimer
GQ9989451Trinucleotide(AAG)82495..118264  bpPrimer
GQ9989361Tetranucleotide(AGGA)104044..83410  bpPrimer
GQ9989362Tetranucleotide(GAAG)520211..230410  bpPrimer
GQ9989431c*(GAG)10(GA)6*3945..83221  bpPrimer
GQ9989561Dinucleotide(TG)1020250..269362  bpPrimer
GQ9989791Trinucleotide(CAC)618172..189225  bpPrimer
GQ9989871Tetranucleotide(ATGG)62476..99176  bpPrimer
GQ9989291Tetranucleotide(CTTC)1040110..149441  bpPrimer
GQ9989861Dinucleotide(AG)612111..122244  bpPrimer
GQ9989511Trinucleotide(GAT)61827..44406  bpPrimer
GQ9989911Dinucleotide(AC)1020132..151210  bpPrimer
GQ9989461Trinucleotide(GGA)618133..150465  bpPrimer
GQ9989491Dinucleotide(GT)1224309..332371  bpPrimer
GQ9989611Trinucleotide(CCT)721113..133209  bpPrimer
GQ9989031Trinucleotide(GAA)721143..163335  bpPrimer
GQ9989231Dinucleotide(TG)1122287..308465  bpPrimer
GQ9989901Tetranucleotide(GGAT)83251..82244  bpPrimer
GQ9989601Tetranucleotide(ATGG)62476..99176  bpPrimer
GQ9989851Tetranucleotide(ATGG)83297..128239  bpPrimer
GQ9989621Tetranucleotide(TGGA)62459..82136  bpPrimer
GQ9989211Trinucleotide(TTG)1133275..307421  bpPrimer
GQ9989401Trinucleotide(AAG)133978..116221  bpPrimer
GQ9989671Trinucleotide(AAC)618121..138428  bpPrimer
GQ9989011Tetranucleotide(GGAG)62481..104293  bpPrimer
GQ9989012Trinucleotide(AGG)515182..196293  bpPrimer
GQ9989221Pentanucleotide(TCGTG)735106..140451  bpPrimer
GQ9989301Tetranucleotide(ATGG)728228..255432  bpPrimer
GQ9989261Tetranucleotide(CATC)1040163..202254  bpPrimer
GQ9989891Tetranucleotide(GATG)72844..71237  bpPrimer
GQ9989281Tetranucleotide(GTTG)72866..93264  bpPrimer
GQ9989571Dinucleotide(AG)612111..122251  bpPrimer
GQ9989591Tetranucleotide(TCCA)62479..102160  bpPrimer
GQ9989551Trinucleotide(GAG)7212..22286  bpPrimer
GQ9989381Tetranucleotide(ATGG)624205..228551  bpPrimer
GQ9989251Dinucleotide(CA)918128..145177  bpPrimer
GQ9989061Dinucleotide(AC)61212..23291  bpPrimer
GQ9989062Dinucleotide(AC)102076..95291  bpPrimer
GQ9989811Trinucleotide(TCT)61820..37450  bpPrimer
GQ9989812Trinucleotide(TCT)51547..61450  bpPrimer
GQ9989781Trinucleotide(CTG)10304..33222  bpPrimer
GQ9989661Tetranucleotide(GGAT)83251..82244  bpPrimer
GQ9989091Tetranucleotide(GGAT)728130..157354  bpPrimer
GQ9989351Tetranucleotide(TGGA)1144212..255319  bpPrimer
GQ9989501Trinucleotide(AGC)618178..195240  bpPrimer
GQ9989371Tetranucleotide(ATGG)72840..67308  bpPrimer
GQ9989691Trinucleotide(GTA)721184..204205  bpPrimer
GQ9989391Trinucleotide(TCA)61895..112197  bpPrimer
GQ9989041Trinucleotide(GAA)721143..163330  bpPrimer
GQ9989321Dinucleotide(TG)1020100..119332  bpPrimer
GQ9989711Trinucleotide(AAC)618238..255315  bpPrimer
GQ9989081Tetranucleotide(ATCC)832137..168243  bpPrimer
GQ9989021Trinucleotide(TCC)618100..117120  bpPrimer
GQ9989761Trinucleotide(AGC)618178..195240  bpPrimer
GQ9989311Tetranucleotide(TGGA)62460..83162  bpPrimer
GQ9989831Tetranucleotide(GATG)624129..152219  bpPrimer
GQ9989832Tetranucleotide(GGAT)520156..175219  bpPrimer
GQ9989201Trinucleotide(GTA)82485..108139  bpPrimer
GQ9989411Trinucleotide(AAC)618121..138307  bpPrimer
GQ9989121Tetranucleotide(TGGA)62450..73296  bpPrimer
GQ9989122Tetranucleotide(GATG)52076..95296  bpPrimer
GQ9989581Tetranucleotide(ATGG)72897..124235  bpPrimer
GQ9989731Trinucleotide(CTA)721309..329336  bpPrimer
GQ9989161Trinucleotide(ATG)618134..151320  bpPrimer
GQ9989771Trinucleotide(GAT)61827..44406  bpPrimer
GQ9989721Trinucleotide(AAG)82495..118264  bpPrimer
GQ9989741Trinucleotide(GGA)618133..150465  bpPrimer
 
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