Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Katsuwonus pelamis [22]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EF1011521Dinucleotide(AC)122443..66165  bpPrimer
EF1011531Dinucleotide(AG)71490..103472  bpPrimer
EF1011532Dinucleotide(GT)816129..144472  bpPrimer
EF1011533Mononucleotide(T)1010287..296472  bpPrimer
EF1011501Dinucleotide(TG)1224375..398560  bpPrimer
EF1011502Trinucleotide(GCA)515419..433560  bpPrimer
EF1011541Dinucleotide(CA)1326191..216525  bpPrimer
EF1011511Dinucleotide(AG)61256..67471  bpPrimer
EF1011512Dinucleotide(TG)1326213..238471  bpPrimer
HM6318121Trinucleotide(AGG)1133165..197490  bpPrimer
HM6318241Tetranucleotide(TATC)218420..103353  bpPrimer
HM6318151Dinucleotide(TG)816512..527825  bpPrimer
HM6318152Trinucleotide(GCT)824675..698825  bpPrimer
HM6318171Tetranucleotide(AGAT)1768198..265800  bpPrimer
HM6318172Tetranucleotide(TAGA)1560273..332800  bpPrimer
HM6318173Tetranucleotide(TAGA)1768341..408800  bpPrimer
HM6318271Dinucleotide(TA)612192..203487  bpPrimer
HM6318272Tetranucleotide(GATA)1248206..253487  bpPrimer
HM6318131Tetranucleotide(TGAC)520170..189385  bpPrimer
HM6318191Tetranucleotide(GATA)28112314..425620  bpPrimer
HM6318251Tetranucleotide(CTAT)1352189..240600  bpPrimer
HM6318231Tetranucleotide(ATCT)1664170..233717  bpPrimer
HM6318201Tetranucleotide(TCTA)114431..74383  bpPrimer
HM6318161Tetranucleotide(AACT)624266..289431  bpPrimer
HM6318181Tetranucleotide(ATAG)62496..119871  bpPrimer
HM6318182Tetranucleotide(AGAT)1872138..209871  bpPrimer
HM6318183Mononucleotide(A)1212232..243871  bpPrimer
HM6318221Tetranucleotide(ATAG)14569..64379  bpPrimer
HM6318222Tetranucleotide(ATAG)52069..88379  bpPrimer
HM6318281Tetranucleotide(AACT)624279..302443  bpPrimer
HM6318261Tetranucleotide(TAGA)1040297..336840  bpPrimer
HM6318211Tetranucleotide(ATAG)2184296..379417  bpPrimer
 
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