Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Polydactylus sexfilis [24]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
FJ7677861Dinucleotide(AC)2448210..257310  bpPrimer
HM5860751Dinucleotide(AC)153025..54470  bpPrimer
HM5860752Dinucleotide(CA)71456..69470  bpPrimer
HM5860753Dinucleotide(AC)816247..262470  bpPrimer
HM5860754Dinucleotide(AC)2856275..330470  bpPrimer
FJ7677821Dinucleotide(CA)163278..109298  bpPrimer
HM5860871Dinucleotide(CA)122467..90305  bpPrimer
HM5860872Dinucleotide(CA)1632163..194305  bpPrimer
HM5860873Dinucleotide(CA)2448197..244305  bpPrimer
HM5860761Dinucleotide(GT)3570288..357455  bpPrimer
HM5860791Mononucleotide(T)1515402..416570  bpPrimer
HM5860792Mononucleotide(A)1010487..496570  bpPrimer
HM5860793Dinucleotide(TG)918553..570570  bpPrimer
FJ7677781Dinucleotide(AC)275484..137194  bpPrimer
HM5860861Dinucleotide(TG)265269..120334  bpPrimer
HM5860821Dinucleotide(TG)2754105..158237  bpPrimer
FJ7677831Dinucleotide(GT)71469..82181  bpPrimer
FJ7677851Tetranucleotide(CACG)83245..76270  bpPrimer
FJ7677841Dinucleotide(AC)142883..110260  bpPrimer
FJ7677842Dinucleotide(CA)714156..169260  bpPrimer
FJ7677843Dinucleotide(CA)1020174..193260  bpPrimer
HM5860811Dinucleotide(CT)1632159..190536  bpPrimer
HM5860841Dinucleotide(TG)2346477..522647  bpPrimer
HM5860771Dinucleotide(CA)1428102..129525  bpPrimer
HM5860772Dinucleotide(AC)2448135..182525  bpPrimer
HM5860773Dinucleotide(AC)1836269..304525  bpPrimer
HM5860774Dinucleotide(CA)2856306..361525  bpPrimer
FJ7677811Dinucleotide(GT)142877..104141  bpPrimer
HM5860741Dinucleotide(CA)3060179..238311  bpPrimer
FJ7677801Dinucleotide(GT)2448144..191229  bpPrimer
HM5860781Dinucleotide(AC)10120247..248473  bpPrimer
HM5860782Tetranucleotide(CATT)832366..397473  bpPrimer
HM5860801Dinucleotide(CA)1938398..435508  bpPrimer
HM5860831Dinucleotide(CA)1020130..149337  bpPrimer
FJ7677771Dinucleotide(TG)102097..116220  bpPrimer
FJ7677791Mononucleotide(A)121236..47264  bpPrimer
FJ7677792Dinucleotide(CA)1734103..136264  bpPrimer
 
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