Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Poecilia reticulata [232]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB1003261Dinucleotide(TG)2040197..236457  bpPrimer
AB1003262Dinucleotide(GT)2244239..282457  bpPrimer
AF2541161Dinucleotide(TC)612142..153188  bpPrimer
DQ8556021Tetranucleotide(CTGA)520211..230838  bpPrimer
DQ8556022Dinucleotide(CA)1836527..562838  bpPrimer
DQ8555971Dinucleotide(AC)1020262..281572  bpPrimer
DQ8555972Dinucleotide(AC)714294..307572  bpPrimer
AF4679081Dinucleotide(GT)1428219..246407  bpPrimer
AF4679082Dinucleotide(TG)1122250..271407  bpPrimer
AF4679083Dinucleotide(TG)816274..289407  bpPrimer
AF4679084Dinucleotide(GT)816298..313407  bpPrimer
BV0971451Tetranucleotide(GAAA)29116248..363609  bpPrimer
DQ8556171Dinucleotide(TG)102097..116453  bpPrimer
AB1003191Dinucleotide(GT)1938105..142230  bpPrimer
AY8309441Tetranucleotide(CATC)832208..239327  bpPrimer
BV0971431Tetranucleotide(ACAA)520523..542870  bpPrimer
DQ8555821Dinucleotide(TC)122472..95528  bpPrimer
DQ8555822Dinucleotide(CA)612107..118528  bpPrimer
EF5087081Dinucleotide(AC)714324..337765  bpPrimer
EF5087082Dinucleotide(AC)714340..353765  bpPrimer
AB6625571Dinucleotide(CT)122480..103149  bpPrimer
AB6625572Composite(TC)6(AC)726105..130149  bpPrimer
AB6625573Dinucleotide(CA)714136..149149  bpPrimer
AF4679021Dinucleotide(TG)612256..267308  bpPrimer
AB1003221Dinucleotide(TG)3264160..223351  bpPrimer
AF4679011Dinucleotide(GT)5110298..199367  bpPrimer
AB1003181Dinucleotide(TC)612147..158458  bpPrimer
AB1003321Dinucleotide(GT)918209..226400  bpPrimer
DQ8555741Dinucleotide(CA)918156..173478  bpPrimer
AB1003381Dinucleotide(GA)2244323..366434  bpPrimer
BV0971471Mononucleotide(T)1111201..211599  bpPrimer
BV0971472Dinucleotide(CA)1938487..524599  bpPrimer
AB1003211Dinucleotide(TG)53106103..208289  bpPrimer
EF5087271Dinucleotide(CA)1530282..311751  bpPrimer
DQ8556041Dinucleotide(TG)612134..145555  bpPrimer
DQ8556042Dinucleotide(TG)918148..165555  bpPrimer
AB6626661Dinucleotide(CT)61233..44179  bpPrimer
AB6626662Dinucleotide(CA)61273..84179  bpPrimer
DQ8555691Dinucleotide(GA)612247..258390  bpPrimer
DQ8555692Dinucleotide(CA)2958284..341390  bpPrimer
AB1003401Dinucleotide(TG)214291..132187  bpPrimer
AB1003311Dinucleotide(GT)612105..116320  bpPrimer
AB1003312Dinucleotide(GT)1224120..143320  bpPrimer
AB1133411Dinucleotide(TG)714171..184303  bpPrimer
AF4679061Dinucleotide(CA)816117..132225  bpPrimer
AB1003171Mononucleotide(T)111143..53390  bpPrimer
AB1003172Dinucleotide(AG)612254..265390  bpPrimer
AY8309431Tetranucleotide(ATGG)1768142..209573  bpPrimer
AB6628051Dinucleotide(AC)91833..50133  bpPrimer
EF5087151Dinucleotide(GA)1224288..311428  bpPrimer
AY2659941Mononucleotide(A)1010154..1631280  bpPrimer
AY2659942Tetranucleotide(GATA)35140554..6931280  bpPrimer
DQ8555941Dinucleotide(CA)204071..110391  bpPrimer
DQ8555942Dinucleotide(CA)612125..136391  bpPrimer
DQ8555781Dinucleotide(AC)816225..240549  bpPrimer
AF4679071Dinucleotide(GT)132676..101360  bpPrimer
AF4679072Mononucleotide(T)1111148..158360  bpPrimer
AB1133401Dinucleotide(GT)63126255..380477  bpPrimer
AB1003411Dinucleotide(TG)4692131..222250  bpPrimer
EF5087171Dinucleotide(TG)1326341..366671  bpPrimer
AB6625801Dinucleotide(CA)11221..22165  bpPrimer
DQ8555901Dinucleotide(TG)1734121..154290  bpPrimer
DQ8555902Dinucleotide(GT)1530156..185290  bpPrimer
AY8309461Tetranucleotide(GATG)1976127..202259  bpPrimer
DQ8555881Dinucleotide(GT)1122166..187755  bpPrimer
AB1003521Dinucleotide(CA)1020158..177350  bpPrimer
AY2659971Dinucleotide(TG)1020403..422598  bpPrimer
AY8309421Tetranucleotide(CTGT)18727..78494  bpPrimer
DQ8555991Dinucleotide(GT)1734180..213712  bpPrimer
AB1003421Dinucleotide(GT)81681..96334  bpPrimer
AF4679041Dinucleotide(GT)1326110..135320  bpPrimer
AF4679042c*(GCGT)6(GT)15*52150..201320  bpPrimer
AF4679043Dinucleotide(GT)612214..225320  bpPrimer
BV0971541Dinucleotide(AG)1836149..184879  bpPrimer
AB1133431Dinucleotide(TG)5410883..190424  bpPrimer
DQ8556051Dinucleotide(TC)1530133..162457  bpPrimer
AB1003541Dinucleotide(GT)1428139..166290  bpPrimer
AB1003542Dinucleotide(GA)1122198..219290  bpPrimer
DQ8555761Dinucleotide(TG)1428283..310540  bpPrimer
AB1003251Dinucleotide(GT)1734102..135317  bpPrimer
AB1003252Dinucleotide(GT)714279..292317  bpPrimer
BV0971381Dinucleotide(TC)1122436..457661  bpPrimer
BV0971382Trinucleotide(ATG)515531..545661  bpPrimer
AB6625301Dinucleotide(AC)81622..3738  bpPrimer
EF5087061Dinucleotide(CA)102046..65492  bpPrimer
EF5087062Mononucleotide(T)1010439..448492  bpPrimer
DQ8556111Dinucleotide(CA)1530282..311751  bpPrimer
AB1003461Dinucleotide(GT)1122143..164360  bpPrimer
DQ8555851Dinucleotide(TG)612168..179546  bpPrimer
DQ8555791Composite(GA)8(GT)730147..176528  bpPrimer
DQ8555792Mononucleotide(T)1313325..337528  bpPrimer
AY8309411Tetranucleotide(CAGA)1352155..206437  bpPrimer
BV0971461Trinucleotide(ACA)721166..186335  bpPrimer
AB1003441Dinucleotide(AC)1632150..181320  bpPrimer
AB1003271Dinucleotide(TG)489654..149352  bpPrimer
AB1003341Dinucleotide(AC)2856118..173238  bpPrimer
DQ8556161Dinucleotide(CA)816137..152489  bpPrimer
AB1003531Dinucleotide(GT)81675..90185  bpPrimer
AY8309471Tetranucleotide(ATGG)832115..146359  bpPrimer
AB1003241Dinucleotide(GT)1224156..179220  bpPrimer
AY2659991Dinucleotide(GT)81664..79718  bpPrimer
EF5087161Dinucleotide(AC)91839..56537  bpPrimer
EF5087162Tetranucleotide(CACG)104068..107537  bpPrimer
DQ8556131Dinucleotide(AC)714119..132503  bpPrimer
DQ8556132Dinucleotide(TG)1122166..187503  bpPrimer
DQ8556133Dinucleotide(GT)1122261..282503  bpPrimer
DQ8556151Dinucleotide(CA)2958201..258829  bpPrimer
AF4679051Dinucleotide(GT)71499..112230  bpPrimer
AF4679052Dinucleotide(GT)1428123..150230  bpPrimer
EF5087291Dinucleotide(TG)714186..199546  bpPrimer
AF5335891Dinucleotide(TG)132650..75238  bpPrimer
AF5335892Dinucleotide(GT)387677..152238  bpPrimer
DQ8556081Mononucleotide(C)1212148..159636  bpPrimer
DQ8556082Mononucleotide(T)1010236..245636  bpPrimer
DQ8556083Dinucleotide(TG)714256..269636  bpPrimer
AB6627801Dinucleotide(CA)61224..35117  bpPrimer
AB6627802Dinucleotide(AC)61237..48117  bpPrimer
DQ8556101Dinucleotide(GT)1836168..203367  bpPrimer
AB1133451Dinucleotide(GT)4794128..221454  bpPrimer
AB1133452Dinucleotide(GT)612228..239454  bpPrimer
EF5087211Dinucleotide(GT)91880..97464  bpPrimer
EF5087212Mononucleotide(T)1010272..281464  bpPrimer
EF5087241Dinucleotide(AC)316246..107390  bpPrimer
BV0971441Tetranucleotide(AAAG)2496209..304593  bpPrimer
DQ8555721Mononucleotide(T)1717133..149492  bpPrimer
DQ8555722Dinucleotide(TG)3876275..350492  bpPrimer
AB6626441Dinucleotide(CA)81633..48101  bpPrimer
DQ8555831Dinucleotide(TG)918100..117573  bpPrimer
DQ8555832Dinucleotide(GT)714119..132573  bpPrimer
AB1003471Dinucleotide(GT)102095..114178  bpPrimer
BV0971531Dinucleotide(AG)612246..257445  bpPrimer
BV0971532Dinucleotide(AG)612270..281445  bpPrimer
AB1003141Dinucleotide(CA)816447..462550  bpPrimer
AY2660001Mononucleotide(T)111167..77662  bpPrimer
AY2660002Dinucleotide(CA)2142156..197662  bpPrimer
DQ8555951Dinucleotide(GT)714149..162588  bpPrimer
AB1003491Dinucleotide(GA)265249..100318  bpPrimer
BV0971351Dinucleotide(TG)1122156..177611  bpPrimer
AB6619651Dinucleotide(CA)18361..36350  bpPrimer
AB6620701Dinucleotide(GT)30601..6069  bpPrimer
BV0971511Tetranucleotide(TGGA)2080256..335646  bpPrimer
AB6620091Dinucleotide(CA)7141..14318  bpPrimer
DQ8555711Dinucleotide(TG)612279..290415  bpPrimer
DQ8555712Dinucleotide(TG)714293..306415  bpPrimer
AY8309451Tetranucleotide(ACAA)62479..102480  bpPrimer
AY8309452Tetranucleotide(CTGT)936306..341480  bpPrimer
AY8309453Tetranucleotide(CTGT)1144346..389480  bpPrimer
AB1003451Dinucleotide(TG)714180..193281  bpPrimer
DQ8556091Dinucleotide(TG)612165..176462  bpPrimer
AB1003201Dinucleotide(TG)224468..111236  bpPrimer
AF1642051Trinucleotide(TAT)236995..163260  bpPrimer
AB1003151Mononucleotide(T)1111107..117653  bpPrimer
AB1003152Dinucleotide(AC)816574..589653  bpPrimer
EF5087301Dinucleotide(GT)816229..244502  bpPrimer
EF5087302Dinucleotide(GT)816257..272502  bpPrimer
AB6624831Dinucleotide(TG)9181..18167  bpPrimer
AB6624832Dinucleotide(GT)102070..89167  bpPrimer
AB6624833Dinucleotide(GT)61294..105167  bpPrimer
AB1003361Dinucleotide(AC)1938266..303370  bpPrimer
AB6620301Dinucleotide(CA)102020..39504  bpPrimer
AB6618791Dinucleotide(CA)1020288..307309  bpPrimer
DQ8555681Dinucleotide(CT)1122101..122271  bpPrimer
DQ8555682Dinucleotide(CA)1428129..156271  bpPrimer
DQ8555683Dinucleotide(CA)612159..170271  bpPrimer
BV0971401Tetranucleotide(TATC)25100137..236570  bpPrimer
BV0971331Tetranucleotide(AATG)2184444..527651  bpPrimer
AB1003371Dinucleotide(CA)816388..403470  bpPrimer
BV0971341Dinucleotide(CA)1938577..614671  bpPrimer
DQ8555801Dinucleotide(TG)612105..116387  bpPrimer
EF5087251Dinucleotide(CA)122447..70263  bpPrimer
EF5087252Dinucleotide(AC)1020181..200263  bpPrimer
EF5087253Dinucleotide(CA)612202..213263  bpPrimer
BV0971521Composite(TCTA)10(TCTG)17108361..468670  bpPrimer
BV0971421Tetranucleotide(ATGG)624251..274523  bpPrimer
AB1003281Dinucleotide(GT)183678..113138  bpPrimer
AB6621141Dinucleotide(AC)163213..44371  bpPrimer
DQ8555861Dinucleotide(TC)1428318..345640  bpPrimer
AB1003391Dinucleotide(TG)816240..255530  bpPrimer
AB1003392Dinucleotide(TG)612373..384530  bpPrimer
AB1003393Dinucleotide(GT)714420..433530  bpPrimer
AB1133421Dinucleotide(AG)71432..45400  bpPrimer
AB1133422Dinucleotide(GT)142849..76400  bpPrimer
AB1133423Dinucleotide(TG)255078..127400  bpPrimer
EF5087231Dinucleotide(GT)714108..121505  bpPrimer
EF5087232Dinucleotide(TG)612123..134505  bpPrimer
EF5087233Dinucleotide(GT)816144..159505  bpPrimer
EF5087234Dinucleotide(GT)1020176..195505  bpPrimer
BV0971501Tetranucleotide(TATC)25100137..236570  bpPrimer
AB6627351Dinucleotide(CA)6121..1255  bpPrimer
AB1003511Dinucleotide(CA)1428161..188470  bpPrimer
DQ8556071Dinucleotide(CA)1020128..147399  bpPrimer
AB6625991Dinucleotide(CA)10201..2034  bpPrimer
AY8309391Tetranucleotide(TCCT)520165..184416  bpPrimer
AY8309392Tetranucleotide(CCTT)728186..213416  bpPrimer
AY8309393Tetranucleotide(CTGT)936350..385416  bpPrimer
EF5087131Dinucleotide(CA)918366..383514  bpPrimer
EF5087071Mononucleotide(A)1010142..151436  bpPrimer
EF5087072Dinucleotide(AG)612353..364436  bpPrimer
BV0971411Tetranucleotide(TATC)728425..452990  bpPrimer
BV0971412Tetranucleotide(TCTA)2392455..546990  bpPrimer
BV0971413Mononucleotide(T)1010885..894990  bpPrimer
EF5087091Dinucleotide(GT)173469..102273  bpPrimer
DQ8555961Dinucleotide(GT)1020179..198563  bpPrimer
BV0971491Tetranucleotide(ATCT)2496485..580781  bpPrimer
DQ8556121Dinucleotide(TG)612216..227478  bpPrimer
EF5087191Dinucleotide(AC)612241..252569  bpPrimer
EF5087192Dinucleotide(CA)612270..281569  bpPrimer
EF5087193Dinucleotide(AC)714409..422569  bpPrimer
EF5087194Dinucleotide(CA)1326446..471569  bpPrimer
EF5087121Dinucleotide(AC)816139..154235  bpPrimer
EF5087221Dinucleotide(TG)1224191..214850  bpPrimer
EF5087222Dinucleotide(GT)714230..243850  bpPrimer
DQ8556031Dinucleotide(GT)1020322..341754  bpPrimer
AB6621751Dinucleotide(TG)81624..3954  bpPrimer
BV0971361Mononucleotide(A)1212241..252683  bpPrimer
BV0971362Tetranucleotide(ATAC)624290..313683  bpPrimer
AB1003431Dinucleotide(AC)1224314..337471  bpPrimer
DQ8555751Dinucleotide(TC)612283..294795  bpPrimer
DQ8555752Dinucleotide(AC)612305..316795  bpPrimer
DQ8555753Dinucleotide(CA)1224440..463795  bpPrimer
DQ8555754Dinucleotide(CA)1020472..491795  bpPrimer
AY2659981Dinucleotide(GT)918235..252623  bpPrimer
AY2659982Dinucleotide(GT)612257..268623  bpPrimer
EF5087101Dinucleotide(AT)612100..111419  bpPrimer
AB1003161Dinucleotide(CA)816436..451481  bpPrimer
AB6619431Dinucleotide(AC)81634..4949  bpPrimer
EF5087201Mononucleotide(A)1515181..195746  bpPrimer
EF5087202Dinucleotide(GT)612338..349746  bpPrimer
EF5087203Mononucleotide(A)1010409..418746  bpPrimer
AB1003351Dinucleotide(CA)918186..203560  bpPrimer
AB1003231Dinucleotide(GT)295875..132263  bpPrimer
AB1003232Dinucleotide(GT)612158..169263  bpPrimer
AY2660011Tetranucleotide(TGCG)145621..76416  bpPrimer
AY2660012Dinucleotide(TG)71482..95416  bpPrimer
AY2660013Mononucleotide(A)1010213..222416  bpPrimer
EF5087141Mononucleotide(A)1010112..121630  bpPrimer
EF5087142Dinucleotide(CA)816255..270630  bpPrimer
BV0971481Tetranucleotide(TCAC)624332..355672  bpPrimer
DQ8555731Dinucleotide(AC)2856143..198477  bpPrimer
EF5087181Dinucleotide(TG)1020179..198431  bpPrimer
DQ8555891Mononucleotide(T)1010578..587679  bpPrimer
BV0971391Tetranucleotide(CTAT)59236350..585679  bpPrimer
AY8309401Tetranucleotide(ATCC)3212886..213492  bpPrimer
AB6627091Dinucleotide(CA)91844..6162  bpPrimer
AB1003121Hexanucleotide(CTCCTT)742408..449786  bpPrimer
AB1003122Trinucleotide(GCT)515464..478786  bpPrimer
AB1003481Mononucleotide(T)101039..48461  bpPrimer
AB1003482Dinucleotide(GA)1122110..131461  bpPrimer
AB1003483Dinucleotide(AG)918133..150461  bpPrimer
AB1003331Dinucleotide(AC)112254..75327  bpPrimer
AB1003301Dinucleotide(GT)397843..120200  bpPrimer
AB1003302Dinucleotide(GT)714131..144200  bpPrimer
AB1003111Dinucleotide(AT)61228..39554  bpPrimer
BV0971371Dinucleotide(AG)1122209..230479  bpPrimer
DQ8555981Dinucleotide(TG)1122169..190384  bpPrimer
DQ8555701Dinucleotide(GT)2958247..304467  bpPrimer
DQ8555841Dinucleotide(TG)816146..161347  bpPrimer
DQ8555842Dinucleotide(TG)1224164..187347  bpPrimer
AF4679031Dinucleotide(TG)918258..275376  bpPrimer
AF4679032Dinucleotide(GT)1224283..306376  bpPrimer
AB1133441Dinucleotide(TG)5811682..197472  bpPrimer
AB1133442Dinucleotide(TG)612200..211472  bpPrimer
AB1003291Dinucleotide(TG)377491..164290  bpPrimer
DQ8556061Dinucleotide(GT)3570156..225373  bpPrimer
 
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