Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Plectropomus maculatus [99]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
DQ6668041Dinucleotide(AC)163270..101155  bpPrimer
DQ6579791Dinucleotide(TG)81632..47102  bpPrimer
DQ6579792Dinucleotide(GT)112249..70102  bpPrimer
DQ6667981Dinucleotide(AC)122470..93147  bpPrimer
DQ6579721Dinucleotide(GT)122423..46102  bpPrimer
DQ6579722Dinucleotide(GA)71461..74102  bpPrimer
DQ6579811Dinucleotide(TG)81632..47102  bpPrimer
DQ6579812Dinucleotide(GT)122449..72102  bpPrimer
DQ6579801Dinucleotide(TG)81632..47104  bpPrimer
DQ6579802Dinucleotide(GT)132649..74104  bpPrimer
DQ6667881Dinucleotide(AC)142870..97151  bpPrimer
DQ6667871Dinucleotide(AC)153070..99153  bpPrimer
DQ6579821Dinucleotide(TG)81632..47106  bpPrimer
DQ6579822Dinucleotide(GT)132649..74106  bpPrimer
DQ6668141Dinucleotide(AC)122470..93147  bpPrimer
DQ6667861Dinucleotide(AC)132670..95149  bpPrimer
AY6883811Dinucleotide(TG)918436..453600  bpPrimer
DQ6668171Dinucleotide(AC)153066..95151  bpPrimer
DQ6579561Dinucleotide(TG)81632..47106  bpPrimer
DQ6579562Dinucleotide(GT)142849..76106  bpPrimer
DQ6579591Dinucleotide(TG)81632..47102  bpPrimer
DQ6579592Dinucleotide(GT)122449..72102  bpPrimer
AY6883771Dinucleotide(AC)1020137..156517  bpPrimer
DQ6579771Dinucleotide(TG)81632..47102  bpPrimer
DQ6579772Dinucleotide(GT)122449..72102  bpPrimer
DQ6579521Dinucleotide(TG)81632..47102  bpPrimer
DQ6579522Dinucleotide(GT)112249..70102  bpPrimer
DQ6579731Dinucleotide(TG)81632..47104  bpPrimer
DQ6579732Dinucleotide(GT)81649..64104  bpPrimer
DQ6579621Dinucleotide(TG)81632..47102  bpPrimer
DQ6579622Dinucleotide(GT)122449..72102  bpPrimer
DQ6579651Dinucleotide(TG)81632..47102  bpPrimer
DQ6579652Dinucleotide(GT)112249..70102  bpPrimer
DQ6579671Dinucleotide(TG)81632..47102  bpPrimer
DQ6579672Dinucleotide(GT)122449..72102  bpPrimer
DQ6667921Dinucleotide(AC)163270..101155  bpPrimer
DQ6668011Dinucleotide(AC)122470..93147  bpPrimer
AY6883761Dinucleotide(TG)132653..78303  bpPrimer
AY6883762Dinucleotide(GT)81680..95303  bpPrimer
DQ6667931Dinucleotide(AC)122470..93147  bpPrimer
DQ6579611Dinucleotide(TG)81632..47104  bpPrimer
DQ6579612Dinucleotide(GT)132649..74104  bpPrimer
DQ6668191Dinucleotide(AC)122470..93147  bpPrimer
DQ6668001Dinucleotide(AC)122470..93147  bpPrimer
DQ6579711Dinucleotide(TG)81632..47104  bpPrimer
DQ6579712Dinucleotide(GT)122449..72104  bpPrimer
DQ6579761Dinucleotide(TG)81632..47102  bpPrimer
DQ6579762Dinucleotide(GT)122449..72102  bpPrimer
DQ6667891Dinucleotide(AC)163270..101155  bpPrimer
DQ6579741Dinucleotide(TG)81632..47106  bpPrimer
DQ6579742Dinucleotide(GT)122451..74106  bpPrimer
DQ6579831Dinucleotide(TG)81632..47102  bpPrimer
DQ6579832Dinucleotide(GT)122449..72102  bpPrimer
DQ6579631Dinucleotide(TG)81632..47102  bpPrimer
DQ6579632Dinucleotide(GT)112249..70102  bpPrimer
AY6883801Dinucleotide(AC)1530298..327457  bpPrimer
AY6883802Dinucleotide(CA)1836331..366457  bpPrimer
AY6883803Dinucleotide(CA)2244369..412457  bpPrimer
JN2225451Tetranucleotide(TAGA)26104125..228570  bpPrimer
DQ6668131Dinucleotide(AC)153070..99153  bpPrimer
DQ6667911Dinucleotide(AC)122470..93147  bpPrimer
DQ6579641Dinucleotide(TG)81632..47102  bpPrimer
DQ6579642Dinucleotide(GT)122449..72102  bpPrimer
DQ6667961Dinucleotide(AC)122470..93147  bpPrimer
DQ6668121Dinucleotide(AC)122470..93127  bpPrimer
AY6883851Dinucleotide(TG)2448244..291553  bpPrimer
AY6883852Dinucleotide(GA)714303..316553  bpPrimer
AY6883853Dinucleotide(GT)1530457..486553  bpPrimer
DQ6579661Dinucleotide(TG)81632..47102  bpPrimer
DQ6579662Dinucleotide(GT)112251..72102  bpPrimer
DQ6668031Dinucleotide(AC)173470..103157  bpPrimer
DQ6668091Dinucleotide(AC)153070..99153  bpPrimer
DQ6668161Dinucleotide(AC)173470..103157  bpPrimer
DQ6667941Dinucleotide(AC)122470..93147  bpPrimer
DQ6668021Dinucleotide(AC)122468..91145  bpPrimer
DQ6668061Dinucleotide(AC)153070..99153  bpPrimer
DQ6579781Dinucleotide(TG)81632..47102  bpPrimer
DQ6579782Dinucleotide(GT)122449..72102  bpPrimer
DQ6668181Dinucleotide(AC)122470..93147  bpPrimer
AY6883791Composite(CT)6(CA)4092139..230339  bpPrimer
DQ6668151Dinucleotide(AC)163270..101155  bpPrimer
DQ6579571Dinucleotide(TG)81632..47102  bpPrimer
DQ6579572Dinucleotide(GT)122449..72102  bpPrimer
JN2225471Tetranucleotide(CTAT)1560667..7261748  bpPrimer
DQ6668111Dinucleotide(AC)163270..101155  bpPrimer
DQ6668051Dinucleotide(AC)122468..91145  bpPrimer
DQ6667991Dinucleotide(AC)122470..93147  bpPrimer
DQ6668101Dinucleotide(AC)122470..93147  bpPrimer
JN2225491Tetranucleotide(CTAT)936686..7211512  bpPrimer
AY6883831Dinucleotide(TG)714374..387549  bpPrimer
JN2225481Tetranucleotide(GATA)1768388..455555  bpPrimer
DQ6579551Dinucleotide(TG)81632..47102  bpPrimer
DQ6579552Dinucleotide(GT)122449..72102  bpPrimer
DQ6579701Dinucleotide(TG)81632..47104  bpPrimer
DQ6579702Dinucleotide(GT)122451..74104  bpPrimer
DQ6579751Dinucleotide(TG)81632..47102  bpPrimer
DQ6579752Dinucleotide(GT)122449..72102  bpPrimer
DQ6667901Dinucleotide(AC)163270..101155  bpPrimer
DQ6579601Dinucleotide(TG)81632..47104  bpPrimer
DQ6579602Dinucleotide(GT)132649..74104  bpPrimer
JN2225461Tetranucleotide(ATCT)1872292..363930  bpPrimer
DQ6579541Dinucleotide(TG)81632..47104  bpPrimer
DQ6579542Dinucleotide(GT)122451..74104  bpPrimer
DQ6668071Dinucleotide(AC)132668..93147  bpPrimer
DQ6579531Dinucleotide(TG)81632..47104  bpPrimer
DQ6579532Dinucleotide(GT)132649..74104  bpPrimer
DQ6579681Dinucleotide(TG)81632..47106  bpPrimer
DQ6579682Dinucleotide(GT)142849..76106  bpPrimer
DQ6667971Dinucleotide(AC)122470..93147  bpPrimer
DQ6667951Dinucleotide(AC)122470..93147  bpPrimer
DQ6579691Dinucleotide(TG)81632..47102  bpPrimer
DQ6579692Dinucleotide(GT)122449..72102  bpPrimer
DQ6579501Dinucleotide(TG)81632..47104  bpPrimer
DQ6579502Dinucleotide(GT)122451..74104  bpPrimer
DQ6579511Dinucleotide(TG)81632..47104  bpPrimer
DQ6579512Dinucleotide(GT)142849..76104  bpPrimer
DQ6579581Dinucleotide(TG)81632..47104  bpPrimer
DQ6579582Dinucleotide(GT)122449..72104  bpPrimer
AY6883841Composite(CT)17(CA)1462153..214782  bpPrimer
DQ6668081Dinucleotide(AC)153070..99153  bpPrimer
AY6883781Tetranucleotide(ACTC)520211..230423  bpPrimer
AY6883782Dinucleotide(CA)2448244..291423  bpPrimer
KF9925481Tetranucleotide(TCAT)1456331..386489  bpPrimer
KF9925541Tetranucleotide(TCTA)2080792..8711240  bpPrimer
KF9925531Tetranucleotide(GATA)1976220..295438  bpPrimer
KF9925521Tetranucleotide(CTTT)1872269..340487  bpPrimer
KF9925522Dinucleotide(GT)816455..470487  bpPrimer
KF9925611Tetranucleotide(AAAT)1560169..228357  bpPrimer
KF9925591Tetranucleotide(ATAG)1976510..585723  bpPrimer
KF9925551Tetranucleotide(GATA)1248204..251480  bpPrimer
KF9925581Tetranucleotide(TCTA)1144123..166751  bpPrimer
KF9925631Tetranucleotide(ATGT)1040166..205352  bpPrimer
KF9925561Tetranucleotide(TATC)1456690..745880  bpPrimer
KF9925511Tetranucleotide(TAGA)197650..125392  bpPrimer
KF9925621Tetranucleotide(TTTC)1664167..230518  bpPrimer
KF9925571Composite(ATCT)15(ATCC)684470..553774  bpPrimer
KF9925501Tetranucleotide(TATC)93656..91517  bpPrimer
KF9925601Tetranucleotide(AGAT)1664329..392446  bpPrimer
KF9925491Tetranucleotide(GATA)1976220..295457  bpPrimer
 
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