Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Plectropomus laevis [27]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AF2498481Dinucleotide(CA)112275..96135  bpPrimer
AF2498651Dinucleotide(TG)244829..76156  bpPrimer
AF2498571Dinucleotide(GT)81629..44121  bpPrimer
AF2498611Dinucleotide(AC)1020102..121386  bpPrimer
AF2498591Dinucleotide(TG)336666..131208  bpPrimer
AF2498491Dinucleotide(CA)1734125..158236  bpPrimer
AF2498551Dinucleotide(GT)173435..68133  bpPrimer
AF2498691Dinucleotide(AC)204051..90129  bpPrimer
AF2498521Dinucleotide(AC)102032..51126  bpPrimer
AF2498501Composite(TG)35(CG)129454..147232  bpPrimer
AF2498541Dinucleotide(CA)438664..149247  bpPrimer
AF2498621Dinucleotide(TG)2040126..165227  bpPrimer
AF2498622Dinucleotide(TG)918168..185227  bpPrimer
AF2498531Dinucleotide(GT)275456..109198  bpPrimer
AF2498532Dinucleotide(GT)1632119..150198  bpPrimer
AF2498561Tetranucleotide(CTGG)83290..121197  bpPrimer
AF2498562Tetranucleotide(CTGG)624126..149197  bpPrimer
AF2498661Dinucleotide(GT)1020194..213323  bpPrimer
AF2498511Dinucleotide(CT)91894..111251  bpPrimer
AF2498512Dinucleotide(CA)3060118..177251  bpPrimer
AF2498681Dinucleotide(CA)285666..121673  bpPrimer
AF2498631Dinucleotide(TG)4998100..197319  bpPrimer
AF2498581Dinucleotide(TG)612219..230305  bpPrimer
AF2498601Dinucleotide(TC)714103..116137  bpPrimer
DQ6580471Dinucleotide(TG)244820..67102  bpPrimer
DQ6580461Dinucleotide(TG)265220..71106  bpPrimer
DQ6580451Dinucleotide(TG)234620..6595  bpPrimer
DQ6668231Dinucleotide(AC)153070..99153  bpPrimer
DQ6668221Dinucleotide(AC)153070..99153  bpPrimer
 
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