Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Plectropomus areolatus [22]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KC6024281Trinucleotide(ACA)1545111..155495  bpPrimer
KC6024261Trinucleotide(TGT)1133210..242381  bpPrimer
KC6024151Dinucleotide(AC)714146..159473  bpPrimer
KC6024152Dinucleotide(CA)2142184..225473  bpPrimer
KC6024181Pentanucleotide(AGCCG)52566..90505  bpPrimer
KC6024182Trinucleotide(CCT)515160..174505  bpPrimer
KC6024183Dinucleotide(TG)1836216..251505  bpPrimer
KC6024184Dinucleotide(TG)1530405..434505  bpPrimer
KC6024185Dinucleotide(GT)612446..457505  bpPrimer
KC6024231Trinucleotide(TTG)72189..109605  bpPrimer
KC6024171Dinucleotide(TG)3366111..176425  bpPrimer
KC6024172Dinucleotide(GT)2040200..239425  bpPrimer
DQ6668211Dinucleotide(AC)163270..101155  bpPrimer
KC6024301Dinucleotide(AG)71462..75578  bpPrimer
KC6024302Tetranucleotide(CTAT)35140244..383578  bpPrimer
KC6024271Mononucleotide(T)111177..87646  bpPrimer
KC6024272Trinucleotide(TTG)1339431..469646  bpPrimer
DQ6580501Dinucleotide(TG)183620..5585  bpPrimer
KC6024251Tetranucleotide(AGAT)728421..448525  bpPrimer
KC6024161Dinucleotide(GA)61252..63682  bpPrimer
KC6024162Dinucleotide(AC)2856381..436682  bpPrimer
KC6024321Tetranucleotide(GATA)936408..443847  bpPrimer
KC6024322Dinucleotide(CT)2142534..575847  bpPrimer
KC6024323Dinucleotide(AC)918591..608847  bpPrimer
KC6024291Dinucleotide(CA)224466..109520  bpPrimer
KC6024292Tetranucleotide(ACAT)728115..142520  bpPrimer
KC6024141Dinucleotide(GT)102032..51507  bpPrimer
KC6024142Dinucleotide(GT)61261..72507  bpPrimer
KC6024143Dinucleotide(TG)1734459..492507  bpPrimer
KC6024221Dinucleotide(GT)173480..113482  bpPrimer
KC6024191Dinucleotide(AC)2040187..226746  bpPrimer
KC6024311Tetranucleotide(TCTA)1560118..177623  bpPrimer
KC6024312Dinucleotide(GT)3264347..410623  bpPrimer
KC6024241Tetranucleotide(ATCT)1664189..252458  bpPrimer
KC6024211Dinucleotide(GT)3264289..352506  bpPrimer
KC6024201Dinucleotide(GT)346866..133373  bpPrimer
KC6024202Dinucleotide(GT)1224263..286373  bpPrimer
DQ6668201Dinucleotide(AC)163270..101155  bpPrimer
 
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