Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Oreochromis mossambicus [42]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
GU3910201Dinucleotide(TG)2040181..220390  bpPrimer
FJ3802251Dinucleotide(TC)81648..63180  bpPrimer
GU3910271Dinucleotide(CA)2142135..176429  bpPrimer
FJ3802181Dinucleotide(AC)326437..100154  bpPrimer
GU3910261Tetranucleotide(TCTA)832505..536603  bpPrimer
GU3910221Tetranucleotide(GATA)832274..305548  bpPrimer
GU3910222Tetranucleotide(AGAT)520369..388548  bpPrimer
GU3910223Tetranucleotide(GATA)1144422..465548  bpPrimer
FJ3802221Trinucleotide(AAC)61822..3977  bpPrimer
FJ3802211Dinucleotide(AC)112256..77151  bpPrimer
GU3910281Dinucleotide(GT)2040431..470665  bpPrimer
GU3910282Dinucleotide(TG)1326472..497665  bpPrimer
GU3910241Tetranucleotide(TATC)2288237..324552  bpPrimer
FJ3802201Dinucleotide(AC)122432..55114  bpPrimer
FJ3802191Dinucleotide(GT)204052..91175  bpPrimer
GU3910211Tetranucleotide(TATC)104084..123470  bpPrimer
GU3910212Tetranucleotide(TCTA)520162..181470  bpPrimer
GU3910213Tetranucleotide(TCTA)832246..277470  bpPrimer
FJ3802171Dinucleotide(AC)2550111..160268  bpPrimer
GU3910251Tetranucleotide(TAGA)1456646..701950  bpPrimer
GU3910231Mononucleotide(G)1010192..201758  bpPrimer
GU3910232Composite(ACGG)5(ACAG)6(ATAG)15104439..542758  bpPrimer
FJ3802241Tetranucleotide(ATGG)62424..4798  bpPrimer
FJ3802231c*(A)16(AGA)8*3985..123164  bpPrimer
 
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