Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Oncorhynchus nerka [72]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AF2745311Tetranucleotide(TATC)2496287..382458  bpPrimer
U567071Dinucleotide(GA)102068..87209  bpPrimer
U567141Dinucleotide(GT)265255..106172  bpPrimer
U567121Dinucleotide(GA)244857..104174  bpPrimer
AH0036011Tetranucleotide(GGGA)624168..191528  bpPrimer
AH0036012Dinucleotide(AG)612194..205528  bpPrimer
AH0036013Dinucleotide(GA)1836219..254528  bpPrimer
AF2745201Tetranucleotide(ATCT)1560381..440565  bpPrimer
AF2745202Tetranucleotide(TATC)1040444..483565  bpPrimer
U567021Dinucleotide(AG)6122..13336  bpPrimer
U567022Dinucleotide(GA)183627..62336  bpPrimer
AF2745171Tetranucleotide(ATCT)2710899..206413  bpPrimer
AF2745172Tetranucleotide(ATCT)1352215..266413  bpPrimer
AF2745173Tetranucleotide(TCAT)832276..307413  bpPrimer
U567171Dinucleotide(GA)2040142..181395  bpPrimer
U567151Dinucleotide(CA)71449..62260  bpPrimer
U567152Dinucleotide(CA)132665..90260  bpPrimer
U567111Dinucleotide(AC)1326160..185416  bpPrimer
AF2745261Tetranucleotide(GATA)2184103..186347  bpPrimer
AF2745301Tetranucleotide(AGAT)135288..139508  bpPrimer
AF2745302Tetranucleotide(TAGA)1248143..190508  bpPrimer
AF2745303Tetranucleotide(CAGA)624242..265508  bpPrimer
U567211Dinucleotide(CT)357030..99157  bpPrimer
U567061Dinucleotide(TC)1836155..190326  bpPrimer
AF2745211Tetranucleotide(ATAG)936208..243475  bpPrimer
U567091Dinucleotide(TG)5410860..167306  bpPrimer
U567011Tetranucleotide(GGGA)624168..191192  bpPrimer
U566991Dinucleotide(AG)142845..72186  bpPrimer
U566992Dinucleotide(AG)918167..184186  bpPrimer
AF2745291Tetranucleotide(GATA)2496111..206353  bpPrimer
AF2745231Tetranucleotide(TATC)176854..121377  bpPrimer
AF2745251Tetranucleotide(AGAT)1040119..158374  bpPrimer
AF2745241Tetranucleotide(ATCT)2184114..197356  bpPrimer
U567101Dinucleotide(AC)2550101..150189  bpPrimer
U567221Dinucleotide(TG)2244175..218350  bpPrimer
AF2745281Tetranucleotide(TCTA)28112245..356401  bpPrimer
U567131Dinucleotide(CT)2040137..176389  bpPrimer
U567031Dinucleotide(CT)234657..102153  bpPrimer
AF2745181Tetranucleotide(ATCT)1040308..347504  bpPrimer
AF2745161Tetranucleotide(AGAT)1976128..203455  bpPrimer
AF2745162Tetranucleotide(GATA)1872215..286455  bpPrimer
GF1098371Dinucleotide(TG)10201..20262  bpPrimer
U567041Dinucleotide(GT)1224199..222225  bpPrimer
AF2745191Tetranucleotide(ATCT)2811298..209408  bpPrimer
AF2745192Tetranucleotide(ATCT)1144222..265408  bpPrimer
AF2745193Tetranucleotide(CATT)832276..307408  bpPrimer
U567001Dinucleotide(GA)1224247..270492  bpPrimer
AH0036021Dinucleotide(GT)1224199..222446  bpPrimer
AF2745271Tetranucleotide(ATAG)2184324..407545  bpPrimer
U567081Dinucleotide(AC)612115..126331  bpPrimer
U567082Dinucleotide(CA)2448148..195331  bpPrimer
U567083Dinucleotide(CA)1122283..304331  bpPrimer
U567084Dinucleotide(CA)714313..326331  bpPrimer
U567201Dinucleotide(AC)163257..88215  bpPrimer
U567191Dinucleotide(AC)336670..135193  bpPrimer
GF1098381Tetranucleotide(AGAT)624130..153285  bpPrimer
U567161Dinucleotide(AC)336660..125174  bpPrimer
AF2745221Tetranucleotide(CTAT)936222..257431  bpPrimer
AF2745222Tetranucleotide(CTAT)1144262..305431  bpPrimer
AF2745223Tetranucleotide(TCTG)1040313..352431  bpPrimer
U567181Dinucleotide(GT)1632213..244415  bpPrimer
AF2745241Tetranucleotide(ATCT)2184114..197356  bpPrimer
AF2745191Tetranucleotide(ATCT)2811298..209408  bpPrimer
AF2745192Tetranucleotide(ATCT)1144222..265408  bpPrimer
AF2745193Tetranucleotide(CATT)832276..307408  bpPrimer
AF2745201Tetranucleotide(ATCT)1560381..440565  bpPrimer
AF2745202Tetranucleotide(TATC)1040444..483565  bpPrimer
AF2745251Tetranucleotide(AGAT)1040119..158374  bpPrimer
AF2745161Tetranucleotide(AGAT)1976128..203455  bpPrimer
AF2745162Tetranucleotide(GATA)1872215..286455  bpPrimer
AF2745231Tetranucleotide(TATC)176854..121377  bpPrimer
AF2745261Tetranucleotide(GATA)2184103..186347  bpPrimer
AF2745171Tetranucleotide(ATCT)2710899..206413  bpPrimer
AF2745172Tetranucleotide(ATCT)1352215..266413  bpPrimer
AF2745173Tetranucleotide(TCAT)832276..307413  bpPrimer
AF2745291Tetranucleotide(GATA)2496111..206353  bpPrimer
AF2745221Tetranucleotide(CTAT)936222..257431  bpPrimer
AF2745222Tetranucleotide(CTAT)1144262..305431  bpPrimer
AF2745223Tetranucleotide(TCTG)1040313..352431  bpPrimer
AF2745281Tetranucleotide(TCTA)28112245..356401  bpPrimer
AF2745271Tetranucleotide(ATAG)2184324..407545  bpPrimer
AF2745181Tetranucleotide(ATCT)1040308..347504  bpPrimer
AF2745311Tetranucleotide(TATC)2496287..382458  bpPrimer
 
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