Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Naso unicornis [15]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
GU1894021Tetranucleotide(TTGG)52058..77230  bpPrimer
GU1894022Trinucleotide(TTG)51583..97230  bpPrimer
GU1893961Dinucleotide(AG)1224137..160223  bpPrimer
GU1893962Dinucleotide(GA)918162..179223  bpPrimer
GU1894041Trinucleotide(CTT)51576..90222  bpPrimer
GU1894011c*(TGCG)11(GT)7*5748..104217  bpPrimer
GU1893911Dinucleotide(AC)142850..77180  bpPrimer
GU1893971Trinucleotide(TTG)113344..76180  bpPrimer
GU1894031Trinucleotide(TTA)618135..152242  bpPrimer
GU1894032Trinucleotide(TGT)721157..177242  bpPrimer
GU1893921Dinucleotide(AC)153035..64168  bpPrimer
GU1893951Dinucleotide(TG)2244112..155190  bpPrimer
GU1894001Trinucleotide(CTT)82452..75165  bpPrimer
GU1893901Dinucleotide(AC)1224122..145180  bpPrimer
GU1893981Tetranucleotide(ATAG)114470..113206  bpPrimer
GU1893931Dinucleotide(GT)71433..46162  bpPrimer
GU1893932Dinucleotide(GT)102049..68162  bpPrimer
GU1893941Dinucleotide(GT)153040..69192  bpPrimer
GU1893991Tetranucleotide(AATG)728154..181236  bpPrimer
 
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