Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Mulloidichthys flavolineatus [12]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KC4258871Trinucleotide(GGA)1030133..162405  bpPrimer
KC4258911Dinucleotide(GT)132688..113198  bpPrimer
KC4258951Dinucleotide(TG)102099..118200  bpPrimer
KC4258851Dinucleotide(GT)918115..132445  bpPrimer
KC4258841Dinucleotide(CA)816292..307392  bpPrimer
KC4258861Trinucleotide(GCT)72130..50371  bpPrimer
KC4258941Dinucleotide(GT)91850..67131  bpPrimer
KC4258881Dinucleotide(AC)1020186..205380  bpPrimer
KC4258931Trinucleotide(CGG)5158..22246  bpPrimer
KC4258932Trinucleotide(GCC)721176..196246  bpPrimer
KC4258901Trinucleotide(GGA)103091..120180  bpPrimer
KC4258891Dinucleotide(AC)122472..95128  bpPrimer
KC4258921Dinucleotide(CA)1122127..148217  bpPrimer
 
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