Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Mugil cephalus [84]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AY7709281Tetranucleotide(TCTA)2184703..786839  bpPrimer
AY7709221Tetranucleotide(ATAG)28112230..341420  bpPrimer
HM0043231Pentanucleotide(TAGAA)1575372..4461069  bpPrimer
AY7871811Tetranucleotide(ATCT)27108296..403660  bpPrimer
HM0043361Dinucleotide(TG)918513..530753  bpPrimer
HM0043362Dinucleotide(GT)1938538..575753  bpPrimer
HM0043451Dinucleotide(TG)1326174..199483  bpPrimer
AY7871981Tetranucleotide(CTGT)520129..148600  bpPrimer
AY7871982Composite(TCTA)6(TCTG)856176..231600  bpPrimer
HM0043311Dinucleotide(GT)612228..239470  bpPrimer
AY7871771Tetranucleotide(CTAT)1976216..291420  bpPrimer
AY7871861Dinucleotide(TG)132614..39420  bpPrimer
AY7871862Dinucleotide(GT)122441..64420  bpPrimer
AY7871791Tetranucleotide(TATG)728441..468760  bpPrimer
HM0043401Mononucleotide(A)1212280..291550  bpPrimer
HM0043402Dinucleotide(TG)2652466..517550  bpPrimer
AY7871741Tetranucleotide(GTCT)624140..163300  bpPrimer
AY7871871Dinucleotide(AC)122427..50204  bpPrimer
AY7871891Dinucleotide(TG)1224165..188320  bpPrimer
HM0043251Dinucleotide(GT)1224186..209775  bpPrimer
HM0043252Dinucleotide(TG)714211..224775  bpPrimer
AY7871961Dinucleotide(CA)1020230..249394  bpPrimer
AY7871901Tetranucleotide(TACA)52084..103350  bpPrimer
AY7871902Dinucleotide(GT)2856197..252350  bpPrimer
AY7871841Dinucleotide(TG)71498..111220  bpPrimer
AY7871842Dinucleotide(TG)714136..149220  bpPrimer
AY7871843Dinucleotide(TG)2244152..195220  bpPrimer
AY7871781Tetranucleotide(AGAT)1456221..276449  bpPrimer
AY7872011Dinucleotide(TG)112243..64400  bpPrimer
AY7871921Mononucleotide(A)1111163..173925  bpPrimer
AY7871922Tetranucleotide(ATCT)29116704..819925  bpPrimer
AY7709301Tetranucleotide(AGAT)1352260..311600  bpPrimer
AY7872001Dinucleotide(GT)183649..84412  bpPrimer
HM0043381Dinucleotide(TG)132684..109181  bpPrimer
HM0043261Dinucleotide(GT)1326350..375975  bpPrimer
HM0043262Mononucleotide(C)1111872..882975  bpPrimer
AY7709231Tetranucleotide(ATCT)2811257..168840  bpPrimer
AY7871971Dinucleotide(CA)275424..77320  bpPrimer
AY7709261Tetranucleotide(TATC)624145..168540  bpPrimer
AY7709262Tetranucleotide(CTAT)520192..211540  bpPrimer
HM0043371Dinucleotide(CA)1428359..386690  bpPrimer
HM0043372Trinucleotide(GCA)515511..525690  bpPrimer
AY7709251Tetranucleotide(CTAT)93655..90590  bpPrimer
AY7709252Mononucleotide(T)1313503..515590  bpPrimer
HM0043341Dinucleotide(TG)714377..390670  bpPrimer
AY7709291Mononucleotide(T)1212239..250900  bpPrimer
AY7709292Tetranucleotide(ATAG)1144494..537900  bpPrimer
HM0043281Dinucleotide(AC)1530180..209404  bpPrimer
HM0043331Composite(TG)7(GT)2972148..219357  bpPrimer
HM0043332Dinucleotide(GT)612228..239357  bpPrimer
HM0043491Dinucleotide(CA)142824..51552  bpPrimer
AY7871991Tetranucleotide(AGAT)1976351..426660  bpPrimer
HM0043481Dinucleotide(AC)122496..119414  bpPrimer
HM0609801Dinucleotide(AG)1224259..282364  bpPrimer
AY7872051Tetranucleotide(ATCT)1560271..330712  bpPrimer
AY7871951Dinucleotide(TG)2040314..353420  bpPrimer
HM0043471Dinucleotide(CA)81695..110447  bpPrimer
AY7871761Tetranucleotide(ATCT)176852..119424  bpPrimer
AY7709241Composite(GT)15(GA)846137..182360  bpPrimer
HM0043501Dinucleotide(TG)1224275..298392  bpPrimer
HM0043301Dinucleotide(GT)612400..411552  bpPrimer
HM0043302Dinucleotide(TG)612413..424552  bpPrimer
AY7872041Tetranucleotide(TATC)1976108..183741  bpPrimer
AY7872042Mononucleotide(G)1010364..373741  bpPrimer
HM0609791Dinucleotide(CT)132685..110355  bpPrimer
AY7871881Dinucleotide(GT)1122132..153300  bpPrimer
AY7872021Tetranucleotide(AGAT)1872281..352500  bpPrimer
AY7871931Tetranucleotide(ATCT)1560225..284889  bpPrimer
AY7871932Trinucleotide(GAT)515760..774889  bpPrimer
HM0609741Pentanucleotide(GAGAG)525167..191252  bpPrimer
HM0043461Dinucleotide(TG)142822..49483  bpPrimer
AY7872031Mononucleotide(T)111170..80480  bpPrimer
AY7872032Tetranucleotide(ATGG)1144283..326480  bpPrimer
AY7872033Tetranucleotide(GATA)936346..381480  bpPrimer
HM0043241Dinucleotide(GT)3060314..373472  bpPrimer
HM0043351Dinucleotide(TG)612157..168272  bpPrimer
HM0043271Dinucleotide(CA)1326198..223241  bpPrimer
AY7871831Dinucleotide(TG)2040245..284540  bpPrimer
AY7871832Mononucleotide(T)1010287..296540  bpPrimer
HM0043411Dinucleotide(TG)1224204..227690  bpPrimer
AY7871851Dinucleotide(TG)1836209..244320  bpPrimer
AY7709311Tetranucleotide(ATAG)1560486..545840  bpPrimer
HM0609731Dinucleotide(AG)714117..130299  bpPrimer
HM0609691Composite(TG)9(AG)63092..121301  bpPrimer
AY7871801Tetranucleotide(ATCT)176823..90720  bpPrimer
HM0043421Dinucleotide(CA)1428142..169190  bpPrimer
AY7871751Tetranucleotide(TAGA)239213..104240  bpPrimer
AY7709271Tetranucleotide(AGAT)104067..106523  bpPrimer
AY7709272Tetranucleotide(TAGA)1248110..157523  bpPrimer
AY7871821Dinucleotide(CA)255061..110671  bpPrimer
AY7871822Dinucleotide(AC)612112..123671  bpPrimer
AY7871823Tetranucleotide(TATC)1352203..254671  bpPrimer
HM0043291Dinucleotide(TG)1734288..321554  bpPrimer
HM0043321Composite(TTC)6(T)173541..75375  bpPrimer
HM0043322Dinucleotide(TG)816152..167375  bpPrimer
AY7709321Tetranucleotide(CTAT)104071..110452  bpPrimer
AY7709322Tetranucleotide(TATC)1456119..174452  bpPrimer
HM0043391Dinucleotide(AC)816484..499617  bpPrimer
HM0609701Dinucleotide(TC)918247..264458  bpPrimer
HM0609751Dinucleotide(CA)1122250..271340  bpPrimer
HM0609771Dinucleotide(TC)816189..204264  bpPrimer
AY7871911Dinucleotide(AC)1530186..215300  bpPrimer
HM0043431Dinucleotide(GT)1224386..409452  bpPrimer
HM0609711Dinucleotide(GA)918207..224272  bpPrimer
HM0043511Dinucleotide(CA)1632411..442631  bpPrimer
HM0043441Dinucleotide(TG)1224491..514661  bpPrimer
HM0609761Dinucleotide(GA)714118..131410  bpPrimer
AY7871941Composite(ATCT)25(ATCC)19(ATCT)1423238..269840  bpPrimer
 
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