Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Monopterus albus [526]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
DQ9875881Trinucleotide(TGG)515325..339402  bpPrimer
DQ9875831Composite(TC)21(AC)2082136..217488  bpPrimer
DQ9875832Mononucleotide(T)1111477..487488  bpPrimer
JN7126861Dinucleotide(TG)1938284..321621  bpPrimer
EF4731521Dinucleotide(GT)112221..42149  bpPrimer
JN7126841Dinucleotide(AC)816200..215477  bpPrimer
JN7126851Dinucleotide(AC)1632521..552880  bpPrimer
DQ9875801Dinucleotide(GT)1836123..158325  bpPrimer
EF4731591Tetranucleotide(ATCA)728216..243317  bpPrimer
EU8462161Trinucleotide(ACC)515288..302505  bpPrimer
EU8462162Dinucleotide(AC)2040392..431505  bpPrimer
DQ9875921Dinucleotide(TG)2652220..271316  bpPrimer
EU8462111Dinucleotide(CA)265289..140338  bpPrimer
DQ9875891Dinucleotide(AC)714128..141269  bpPrimer
EF4731601Tetranucleotide(ATTG)83269..100127  bpPrimer
EU8462211Dinucleotide(AC)2142126..167236  bpPrimer
DQ9875701Dinucleotide(AC)612124..135359  bpPrimer
EU8462251Dinucleotide(CA)1326327..352503  bpPrimer
JN7126821Dinucleotide(CA)612178..189350  bpPrimer
JN7126891Dinucleotide(TG)1632299..330625  bpPrimer
EF4731451Tetranucleotide(AGAT)114479..122252  bpPrimer
AB6625331Dinucleotide(AC)61222..3373  bpPrimer
DQ9875821Dinucleotide(CA)71484..97453  bpPrimer
AB6626461Dinucleotide(CA)81627..4274  bpPrimer
EF4731531Tetranucleotide(CAAT)83228..59126  bpPrimer
JN7126921Dinucleotide(GT)2040215..254413  bpPrimer
EF4731571Tetranucleotide(ATTG)83269..100127  bpPrimer
DQ9875811Composite(AT)6(AC)1338184..221342  bpPrimer
EF4731581Tetranucleotide(TGAT)72854..81231  bpPrimer
EU8462171Dinucleotide(TG)1530348..377762  bpPrimer
AB6619441Dinucleotide(AC)61239..5069  bpPrimer
AB6621161Dinucleotide(CA)7141..14315  bpPrimer
AB6625821Mononucleotide(C)1212117..128128  bpPrimer
AB6625121Dinucleotide(GT)163231..6262  bpPrimer
AB6627621Dinucleotide(AC)112296..117168  bpPrimer
EU8462271Dinucleotide(AC)367285..156421  bpPrimer
EU8462101Dinucleotide(GT)2142194..235425  bpPrimer
DQ9875841Dinucleotide(GT)1122259..280434  bpPrimer
DQ9875842Trinucleotide(AGG)618335..352434  bpPrimer
EU8462231Dinucleotide(GA)1224117..140423  bpPrimer
EU8462232Dinucleotide(GT)1020149..168423  bpPrimer
EU8462181Dinucleotide(GT)2244318..361426  bpPrimer
EU8462221Dinucleotide(AC)918129..146454  bpPrimer
EU8462222Dinucleotide(GT)1224235..258454  bpPrimer
EU8462223Dinucleotide(TG)612260..271454  bpPrimer
DQ9875861Dinucleotide(TG)714132..145335  bpPrimer
EU8462281Dinucleotide(TG)2958147..204342  bpPrimer
AB6628331Dinucleotide(AC)61242..5374  bpPrimer
JN7126811Dinucleotide(GA)244895..142389  bpPrimer
JN7126881Composite(TC)12(AC)1554145..198476  bpPrimer
JN7126791Dinucleotide(AC)1326119..144387  bpPrimer
DQ9875771Dinucleotide(GT)612140..151250  bpPrimer
AB6626031Dinucleotide(AC)71419..3274  bpPrimer
EU8462151Dinucleotide(CA)1530201..230491  bpPrimer
DQ9875761Dinucleotide(CA)214272..113222  bpPrimer
EU8462241Dinucleotide(CA)183678..113449  bpPrimer
AB6624461Trinucleotide(CTG)5151..15118  bpPrimer
AB6627851Dinucleotide(CA)71438..5153  bpPrimer
JN7126831Dinucleotide(AC)1734113..146235  bpPrimer
EF4731541Tetranucleotide(TAGA)14569..64191  bpPrimer
AB6619041Dinucleotide(CA)71474..87382  bpPrimer
EU8462261Dinucleotide(CA)2346285..330411  bpPrimer
EF4731551Tetranucleotide(ATTG)83269..100127  bpPrimer
EU8462131Dinucleotide(TG)214237..78691  bpPrimer
AB6622701Dinucleotide(CA)71450..63178  bpPrimer
EU8462141Dinucleotide(GT)1632385..416587  bpPrimer
DQ9875781Dinucleotide(TG)1938115..152688  bpPrimer
EU8462191Dinucleotide(CA)1836133..168319  bpPrimer
EF4731491Dinucleotide(TG)1632140..171186  bpPrimer
EF4731471Dinucleotide(AG)81650..65322  bpPrimer
EF4731472Tetranucleotide(AGAT)25100180..279322  bpPrimer
DQ9875871Dinucleotide(AC)91826..43482  bpPrimer
JN7126911Dinucleotide(CA)1836435..470732  bpPrimer
JN7126781Dinucleotide(GT)163270..101363  bpPrimer
AB6628081Dinucleotide(AC)61229..40146  bpPrimer
AB6620741Dinucleotide(GT)9181..1845  bpPrimer
EF4731481Tetranucleotide(ATCT)187243..114180  bpPrimer
AB6618821Dinucleotide(AC)1632221..252300  bpPrimer
EU8462201Dinucleotide(AC)2142318..359408  bpPrimer
DQ9875751Dinucleotide(CA)1020205..224298  bpPrimer
JN7126801Dinucleotide(TC)1224153..176348  bpPrimer
JN7126802Dinucleotide(CA)1326178..203348  bpPrimer
AB6626231Dinucleotide(CA)19381..3883  bpPrimer
EF4731611Tetranucleotide(CAAT)83228..59127  bpPrimer
DQ9875791Dinucleotide(TG)1020127..146347  bpPrimer
DQ9875911Dinucleotide(CA)1122181..202229  bpPrimer
JN7126771Dinucleotide(GT)816152..167362  bpPrimer
JN7126772Dinucleotide(TG)714169..182362  bpPrimer
JN7126773Dinucleotide(TG)1224268..291362  bpPrimer
AB6620491Dinucleotide(AC)18361..36194  bpPrimer
AB6620492Dinucleotide(CA)612126..137194  bpPrimer
DQ9875741Dinucleotide(CA)234669..114278  bpPrimer
EU8462121Dinucleotide(GT)1734362..395450  bpPrimer
DQ9875851Dinucleotide(CA)1224122..145717  bpPrimer
DQ9875852Dinucleotide(AC)1428147..174717  bpPrimer
DQ9875853Dinucleotide(AC)3060177..236717  bpPrimer
EU8462291Dinucleotide(GT)1632113..144516  bpPrimer
DQ9875691Dinucleotide(GT)112277..98476  bpPrimer
DQ9875692Dinucleotide(GT)612237..248476  bpPrimer
AB6621361Dinucleotide(CA)918135..152152  bpPrimer
JN7126901Dinucleotide(CA)1326384..409880  bpPrimer
DQ9875711Dinucleotide(GT)6121..12322  bpPrimer
EF4731461Tetranucleotide(TCTA)25100128..227241  bpPrimer
DQ9875931Dinucleotide(GT)173448..81478  bpPrimer
DQ9875932Dinucleotide(GA)61286..97478  bpPrimer
JN7126871Dinucleotide(TG)1224149..172396  bpPrimer
KP1365131Tetranucleotide(CATA)104012..5195  bpPrimer
KP1365031Trinucleotide(TCA)92710..3695  bpPrimer
KP1365011Trinucleotide(CAT)154532..7687  bpPrimer
KP1365111Tetranucleotide(ATAC)124844..91105  bpPrimer
KP1365091Trinucleotide(TAA)113340..7288  bpPrimer
KP1365071Trinucleotide(ACA)123610..4594  bpPrimer
KP1365041Trinucleotide(TAA)113357..89100  bpPrimer
KP1365101Tetranucleotide(ATAG)145612..67101  bpPrimer
KP1364961Trinucleotide(TGA)123630..6581  bpPrimer
KP1365061Trinucleotide(TCA)113356..8898  bpPrimer
KP1364971Trinucleotide(GAG)133910..4883  bpPrimer
KP1364991Trinucleotide(TTA)164832..7987  bpPrimer
KP1365081Trinucleotide(ATG)11337..3990  bpPrimer
KP1364981Trinucleotide(AAC)144229..7079  bpPrimer
KP1365021Trinucleotide(CAT)11334..3681  bpPrimer
KP1365001Trinucleotide(ATT)123616..5192  bpPrimer
KP1365051Trinucleotide(ATA)123652..8797  bpPrimer
KP1365121Tetranucleotide(AAAT)9363..3886  bpPrimer
MF7737051Dinucleotide(GT)918143..160257  bpPrimer
MF7736961Dinucleotide(TG)1530100..129295  bpPrimer
MF7737041Dinucleotide(CA)1020114..133258  bpPrimer
MF7736951Dinucleotide(TC)816124..139295  bpPrimer
MF7736971Dinucleotide(AC)1224182..205294  bpPrimer
MF7737081Dinucleotide(TG)1020137..156250  bpPrimer
MF7737191Dinucleotide(TG)132667..92240  bpPrimer
MF7737151Tetranucleotide(TACC)62465..88246  bpPrimer
MF7737111Dinucleotide(GT)714104..117247  bpPrimer
MF7736941Dinucleotide(CA)1224152..175321  bpPrimer
MF7737121Tetranucleotide(ATGG)83288..119247  bpPrimer
MF7737021Dinucleotide(TG)1632195..226292  bpPrimer
MF7737091Trinucleotide(AAG)92790..116248  bpPrimer
MF7737181Trinucleotide(TGC)721131..151241  bpPrimer
MF7737011Trinucleotide(CTG)1133115..147291  bpPrimer
MF7737061Dinucleotide(GT)816126..141256  bpPrimer
MF7737031Trinucleotide(AGC)721122..142260  bpPrimer
MF7736991Dinucleotide(TG)918100..117277  bpPrimer
MF7737141Trinucleotide(TGA)618143..160247  bpPrimer
MF7736931Dinucleotide(AC)1122320..341401  bpPrimer
MF7737071Pentanucleotide(AGGAG)84033..72254  bpPrimer
MF7737072Dinucleotide(AC)714196..209254  bpPrimer
 
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