Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Misgurnus anguillicaudatus [295]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB2609561Dinucleotide(CT)714267..280360  bpPrimer
AB3034941Composite(AC)6(AG)1032371..402712  bpPrimer
AB3034942Dinucleotide(GA)1224583..606712  bpPrimer
AB3034943Mononucleotide(G)1111610..620712  bpPrimer
AB3034751Dinucleotide(TC)816993..10081110  bpPrimer
AB3034691Dinucleotide(GA)2754608..6611481  bpPrimer
AB3034692Mononucleotide(A)1010931..9401481  bpPrimer
AB3034391Dinucleotide(AG)1224762..7851326  bpPrimer
AB3035131Dinucleotide(AG)918351..368977  bpPrimer
AB2609641Dinucleotide(GT)816568..5831443  bpPrimer
AB2609642Dinucleotide(AG)1122621..6421443  bpPrimer
AB3036031Dinucleotide(TG)918562..579878  bpPrimer
AB3036032Dinucleotide(TG)714660..673878  bpPrimer
AB3036033Dinucleotide(TG)816676..691878  bpPrimer
AB2609621Dinucleotide(AG)612545..556600  bpPrimer
AB3036201Dinucleotide(GT)816164..179409  bpPrimer
AB3036202Dinucleotide(TG)918207..224409  bpPrimer
AB3036203Dinucleotide(TG)612233..244409  bpPrimer
AB3035241Dinucleotide(AC)3468514..581999  bpPrimer
AB3035242Trinucleotide(AAG)515956..970999  bpPrimer
AB3036141Dinucleotide(AC)1734588..621920  bpPrimer
AB3036091Dinucleotide(AC)1326367..392994  bpPrimer
AB3036092Dinucleotide(CA)714539..552994  bpPrimer
AB2609531Dinucleotide(GA)816146..161240  bpPrimer
AB2609532Dinucleotide(AG)612169..180240  bpPrimer
AB3036061Dinucleotide(CA)1734283..316900  bpPrimer
AB3036062Dinucleotide(CA)714335..348900  bpPrimer
AB0601861Dinucleotide(CA)2244116..159330  bpPrimer
AB3036181Dinucleotide(AG)1326117..142270  bpPrimer
AB0601851Dinucleotide(AC)1020101..120170  bpPrimer
AB3034651Dinucleotide(TC)612946..9571300  bpPrimer
AB3035871Dinucleotide(TG)1428671..6981164  bpPrimer
AB0816311Dinucleotide(CA)265278..129256  bpPrimer
AB3034911Dinucleotide(GA)1938672..7091236  bpPrimer
AB3035881Dinucleotide(TG)53106501..606880  bpPrimer
AB3035261Dinucleotide(AC)1938571..608800  bpPrimer
AB3035262Dinucleotide(GA)612665..676800  bpPrimer
AB3034841Dinucleotide(GA)2652748..7991391  bpPrimer
AB3035831Dinucleotide(AC)1224933..9561166  bpPrimer
AB3035001Dinucleotide(GA)816728..7431328  bpPrimer
AB3035002Dinucleotide(GA)2448754..8011328  bpPrimer
AB3034621Dinucleotide(CT)1428131..1581480  bpPrimer
AB3034622Dinucleotide(TC)612160..1711480  bpPrimer
AB3034623Mononucleotide(T)11111036..10461480  bpPrimer
AB3035901Dinucleotide(GT)3366607..6721121  bpPrimer
AB3035921Dinucleotide(AC)714700..7131190  bpPrimer
AB3035922Dinucleotide(CA)2652715..7661190  bpPrimer
AB3035911Dinucleotide(AC)2346714..7591082  bpPrimer
AB3034321Dinucleotide(TC)612911..9221450  bpPrimer
AB3034322Dinucleotide(TC)714925..9381450  bpPrimer
AB3034323Tetranucleotide(TTAT)5201160..11791450  bpPrimer
AB3035251Dinucleotide(TG)4896522..617854  bpPrimer
AB0601821Dinucleotide(AC)102095..114200  bpPrimer
AB3034581Dinucleotide(TC)612992..10031209  bpPrimer
AB3034451Dinucleotide(TC)2142506..5471407  bpPrimer
AB3034931Dinucleotide(CT)1224420..443763  bpPrimer
AB2609491Dinucleotide(AG)1020159..1781020  bpPrimer
AB3035171Dinucleotide(TG)2652363..414842  bpPrimer
AB3035172Tetranucleotide(CGTG)624427..450842  bpPrimer
AB3035173Dinucleotide(GT)1530456..485842  bpPrimer
AB3036111Dinucleotide(GT)234674..119477  bpPrimer
AB3035801Dinucleotide(AC)1836495..530920  bpPrimer
AB3034901Dinucleotide(TC)1734409..4421359  bpPrimer
AB3034921Dinucleotide(TC)2448840..8871134  bpPrimer
AB3034791Dinucleotide(TC)1224969..9921431  bpPrimer
AB3034731Tetranucleotide(AGAC)52036..55505  bpPrimer
AB3034732Tetranucleotide(GACA)728287..314505  bpPrimer
AB3034733Tetranucleotide(CAGA)624382..405505  bpPrimer
AB3034781Dinucleotide(AG)714355..368945  bpPrimer
AB3034871Dinucleotide(TC)1326305..3301140  bpPrimer
AB0601841Dinucleotide(AC)1020119..138270  bpPrimer
AB0816271Dinucleotide(AC)2040145..184242  bpPrimer
AB3034661Dinucleotide(GT)1224649..672799  bpPrimer
AB3035951Dinucleotide(AC)2040305..344890  bpPrimer
AB3036151Dinucleotide(GT)918249..266456  bpPrimer
AB3036152Dinucleotide(TG)612313..324456  bpPrimer
AB3035841Dinucleotide(AC)3468698..7651108  bpPrimer
AB0601831Mononucleotide(A)111135..45290  bpPrimer
AB0601832Dinucleotide(CA)612134..145290  bpPrimer
AB0601833Dinucleotide(AC)1530147..176290  bpPrimer
AB0816331Dinucleotide(CA)1632101..132237  bpPrimer
AB2388341Dinucleotide(TC)816246..261376  bpPrimer
AB3034631Dinucleotide(CT)2040416..455829  bpPrimer
AB3034311Dinucleotide(GA)612263..2741233  bpPrimer
AB3034312Dinucleotide(GA)816389..4041233  bpPrimer
AB3035161Mononucleotide(G)1414656..6691118  bpPrimer
AB2609541Composite(GT)6(GA)62497..120333  bpPrimer
AB2609542Dinucleotide(AG)714148..161333  bpPrimer
AB0816221Dinucleotide(TG)193837..74205  bpPrimer
AB3035771Dinucleotide(CA)2958642..699960  bpPrimer
AB3034641Dinucleotide(CT)6121055..10661469  bpPrimer
AB3035101Dinucleotide(TC)1326773..7981370  bpPrimer
AB3036161Dinucleotide(CA)2142136..177472  bpPrimer
AB3034351Dinucleotide(AG)1326665..6901612  bpPrimer
AB2609601Dinucleotide(GA)612264..275348  bpPrimer
AB2609602Dinucleotide(AG)1326281..306348  bpPrimer
AB3035041Dinucleotide(CT)1428157..184759  bpPrimer
AB2609701Dinucleotide(TC)91881..98636  bpPrimer
AB2609702Dinucleotide(TC)714273..286636  bpPrimer
AB1115251Dinucleotide(AC)1428179..206369  bpPrimer
AB1115241Dinucleotide(CA)81690..105357  bpPrimer
AB1115242Dinucleotide(AC)1122118..139357  bpPrimer
AB1115243Dinucleotide(AC)1122150..171357  bpPrimer
AB3034541Dinucleotide(TC)1326987..10121386  bpPrimer
AB0601811Dinucleotide(AC)153097..126260  bpPrimer
AB3036071Dinucleotide(TG)4998839..9361327  bpPrimer
AB3034861Dinucleotide(CT)1020193..212485  bpPrimer
AB3034551Dinucleotide(TG)1530604..6331530  bpPrimer
AB3034552Dinucleotide(GA)612677..6881530  bpPrimer
AB3034553Dinucleotide(GA)7141378..13911530  bpPrimer
AB3034801Dinucleotide(AG)918609..626905  bpPrimer
AB3035861Dinucleotide(TG)1938942..9791330  bpPrimer
AB3035862Dinucleotide(TG)1122982..10031330  bpPrimer
AB3034591Mononucleotide(A)111194..1041742  bpPrimer
AB3034592Dinucleotide(TC)1734732..7651742  bpPrimer
AB3035231Dinucleotide(CA)2142557..598875  bpPrimer
AB3034671Dinucleotide(CT)612960..9711504  bpPrimer
AB3034672Dinucleotide(TC)6121283..12941504  bpPrimer
AB3035151Dinucleotide(CT)7141036..10491626  bpPrimer
AB3035152Dinucleotide(TC)6121053..10641626  bpPrimer
AB3034381Dinucleotide(GA)1428238..2651492  bpPrimer
AB3034382Mononucleotide(G)1010719..7281492  bpPrimer
AB3035271Dinucleotide(CT)2040593..632918  bpPrimer
AB3035272Dinucleotide(CT)3468647..714918  bpPrimer
AB0601791Dinucleotide(AC)1122135..156210  bpPrimer
AB2609551Dinucleotide(AG)612126..137670  bpPrimer
AB2609552Dinucleotide(AG)714152..165670  bpPrimer
AB2609553Dinucleotide(GA)816179..194670  bpPrimer
AB3035991Dinucleotide(AC)3978729..8061428  bpPrimer
AB3035821Dinucleotide(AC)2244421..464814  bpPrimer
AB0816301Dinucleotide(AC)2244145..188371  bpPrimer
AB3034331Dinucleotide(AG)21421020..10611425  bpPrimer
AB3034951Dinucleotide(CT)816227..242800  bpPrimer
AB3036101Dinucleotide(AC)2346491..536865  bpPrimer
AB3035111Dinucleotide(AG)714544..5571303  bpPrimer
AB3035112c*(ATAG)6(AG)19*60621..6801303  bpPrimer
AB3034521Dinucleotide(GA)1530717..7461360  bpPrimer
AB3034711Dinucleotide(CT)12241038..10611400  bpPrimer
AB3034712Dinucleotide(AC)7141178..11911400  bpPrimer
AB3035141Dinucleotide(GA)1530397..4261535  bpPrimer
AB3034491Dinucleotide(GA)1326448..4731299  bpPrimer
AB3034492Dinucleotide(AG)1428475..5021299  bpPrimer
AB3034611Dinucleotide(AG)1122704..7251601  bpPrimer
AB3034612Dinucleotide(GA)2346782..8271601  bpPrimer
AB3034601Dinucleotide(AG)816584..599763  bpPrimer
AB3035191Dinucleotide(AC)1938477..514826  bpPrimer
AB3035811Dinucleotide(CA)714545..5581185  bpPrimer
AB3035812Dinucleotide(AC)612560..5711185  bpPrimer
AB3035813Dinucleotide(TG)612665..6761185  bpPrimer
AB3035814Dinucleotide(GA)816690..7051185  bpPrimer
AB3035815Dinucleotide(AG)612707..7181185  bpPrimer
AB3035816Dinucleotide(CA)816975..9901185  bpPrimer
AB3035817Dinucleotide(CA)7141007..10201185  bpPrimer
AB3034811Dinucleotide(GA)1632189..220421  bpPrimer
AB2609591Dinucleotide(GA)3570151..220300  bpPrimer
AB3036041Dinucleotide(AC)3366770..8351018  bpPrimer
AB3034821Dinucleotide(CA)816599..6141297  bpPrimer
AB3034822Dinucleotide(CT)612808..8191297  bpPrimer
AB3034823Dinucleotide(TC)612835..8461297  bpPrimer
AB3036021Dinucleotide(AC)1734277..3101085  bpPrimer
AB3034341Dinucleotide(AC)1224683..7061354  bpPrimer
AB3036131Dinucleotide(GT)8167..22419  bpPrimer
AB3036132Dinucleotide(GT)1734185..218419  bpPrimer
AB0601741Dinucleotide(CA)3978100..177300  bpPrimer
AB3034461Dinucleotide(AG)714706..7191169  bpPrimer
AB3035751Dinucleotide(CA)2040683..722834  bpPrimer
AB3035031Dinucleotide(GA)1020211..230914  bpPrimer
AB2609671Dinucleotide(CT)1020540..559795  bpPrimer
AB2609672Dinucleotide(CT)612591..602795  bpPrimer
AB3034411Dinucleotide(AG)612417..4281500  bpPrimer
AB3034412Dinucleotide(GA)612573..5841500  bpPrimer
AB3034831Dinucleotide(AC)612149..1601537  bpPrimer
AB3034832Dinucleotide(TC)612686..6971537  bpPrimer
AB3034833Dinucleotide(TC)2448701..7481537  bpPrimer
AB3034571Dinucleotide(AG)1122469..4901400  bpPrimer
AB3034572Dinucleotide(GA)1632583..6141400  bpPrimer
AB3034561Dinucleotide(AC)714320..333593  bpPrimer
AB3034562Dinucleotide(CA)816485..500593  bpPrimer
AB3034563Dinucleotide(CA)918523..540593  bpPrimer
AB3034741Dinucleotide(GA)2448542..5891240  bpPrimer
AB3034742Dinucleotide(GA)918592..6091240  bpPrimer
AB3034743Mononucleotide(T)1212623..6341240  bpPrimer
AB3035181Dinucleotide(GT)2244583..626792  bpPrimer
AB3036171Dinucleotide(TG)918171..188337  bpPrimer
AB3036081Dinucleotide(TG)2448128..175292  bpPrimer
AB3034401Dinucleotide(CT)816485..500643  bpPrimer
AB3034531Dinucleotide(CT)918781..7981188  bpPrimer
AB3034532Dinucleotide(TC)918800..8171188  bpPrimer
AB3034533Dinucleotide(TG)612828..8391188  bpPrimer
AB0601781Dinucleotide(AC)1224118..141280  bpPrimer
AB3034851Dinucleotide(AG)918654..6711325  bpPrimer
AB0816241Dinucleotide(AC)816173..188390  bpPrimer
AB0816231Dinucleotide(GT)1836148..183305  bpPrimer
AB3036211Dinucleotide(GT)1734191..224698  bpPrimer
AB0601721Dinucleotide(CA)142880..107243  bpPrimer
AB3035211Dinucleotide(TG)3162485..546909  bpPrimer
AB3035212Dinucleotide(TG)1224549..572909  bpPrimer
AB3038401Dinucleotide(AC)2040240..279644  bpPrimer
AB3035011Dinucleotide(GA)612574..585970  bpPrimer
AB3035012Dinucleotide(GA)714729..742970  bpPrimer
AB3035013Mononucleotide(C)1515900..914970  bpPrimer
AB3036121Dinucleotide(CA)1938414..4511041  bpPrimer
AB3036122Dinucleotide(CT)816964..9791041  bpPrimer
AB3034991Dinucleotide(AG)81682..971069  bpPrimer
AB3036001Dinucleotide(CA)3774931..10041270  bpPrimer
AB3034481Mononucleotide(A)1111316..3261268  bpPrimer
AB3034482Dinucleotide(CT)1938739..7761268  bpPrimer
AB3034483Dinucleotide(TC)1020796..8151268  bpPrimer
AB3034771Dinucleotide(GA)612193..2041473  bpPrimer
AB3034772Dinucleotide(AT)612906..9171473  bpPrimer
AB3035221Dinucleotide(TG)3978261..338457  bpPrimer
AB0816211Composite(CT)36(CA)1296310..405505  bpPrimer
AB0816212Dinucleotide(CA)1530408..437505  bpPrimer
AB0816251Dinucleotide(AC)1632231..262325  bpPrimer
AB3036191Dinucleotide(AG)816454..469765  bpPrimer
AB3034501Dinucleotide(AG)1224165..1881468  bpPrimer
AB3034971Dinucleotide(AG)714204..217742  bpPrimer
AB3034301Dinucleotide(GT)1428449..4761331  bpPrimer
AB3034302Dinucleotide(AG)2040744..7831331  bpPrimer
AB3034303Dinucleotide(GA)612787..7981331  bpPrimer
AB3034304Dinucleotide(GA)714801..8141331  bpPrimer
AB2609651Dinucleotide(AG)714725..738975  bpPrimer
AB2609652Dinucleotide(CT)612809..820975  bpPrimer
AB2609501Dinucleotide(AG)612545..556615  bpPrimer
AB3034371Dinucleotide(AG)1326807..8321614  bpPrimer
AB3034372Dinucleotide(AG)3366835..9001614  bpPrimer
AB3035791Dinucleotide(CA)1632330..3611203  bpPrimer
AB3034761Dinucleotide(AC)714429..4421432  bpPrimer
AB3034762Dinucleotide(TC)612911..9221432  bpPrimer
AB3034763Dinucleotide(TC)1020929..9481432  bpPrimer
AB3035081Dinucleotide(AG)714223..2361269  bpPrimer
AB3035082Dinucleotide(AC)1122430..4511269  bpPrimer
AB3034721Trinucleotide(TGA)515207..221797  bpPrimer
AB3035051Dinucleotide(TG)714421..434927  bpPrimer
AB3035961Dinucleotide(CA)1734432..465790  bpPrimer
AB2609631Dinucleotide(AC)61280..91648  bpPrimer
AB3035071Dinucleotide(AG)612702..7131212  bpPrimer
AB3035121Dinucleotide(TG)1632291..322480  bpPrimer
AB3035122Dinucleotide(GA)714326..339480  bpPrimer
AB3035123Dinucleotide(CT)1020460..479480  bpPrimer
AB3034701Dinucleotide(TC)1938499..536737  bpPrimer
AB3035931Dinucleotide(CA)1530281..310642  bpPrimer
AB3035981Dinucleotide(AC)1530598..6271130  bpPrimer
AB3035982Dinucleotide(AC)1020650..6691130  bpPrimer
AB3036011Dinucleotide(TG)918922..9391233  bpPrimer
AB3036012Dinucleotide(GT)816958..9731233  bpPrimer
AB0816261Composite(TC)20(AC)2080122..201305  bpPrimer
AB3034681Dinucleotide(GA)2040747..7861176  bpPrimer
AB3035971Dinucleotide(AC)1122321..342729  bpPrimer
AB3034421Dinucleotide(CT)1122406..4271453  bpPrimer
AB3034422Dinucleotide(TC)714472..4851453  bpPrimer
AB0601771Dinucleotide(TG)714117..130280  bpPrimer
AB3035891Dinucleotide(GT)1428510..5371190  bpPrimer
AB3035892Dinucleotide(TG)612725..7361190  bpPrimer
AB3035893Dinucleotide(TG)1122741..7621190  bpPrimer
AB3035894Dinucleotide(TG)1530767..7961190  bpPrimer
AB3035895Dinucleotide(TG)714831..8441190  bpPrimer
AB3035761Dinucleotide(TG)1836364..399790  bpPrimer
AB3034881Dinucleotide(AC)1020439..458870  bpPrimer
AB2609661Dinucleotide(AG)714725..738741  bpPrimer
AB0816291Dinucleotide(TG)2346169..214370  bpPrimer
AB0601801Composite(CT)28(CA)974151..224350  bpPrimer
AB3034441Dinucleotide(CT)714147..160619  bpPrimer
AB3034442Dinucleotide(TC)612221..232619  bpPrimer
AB3034443Dinucleotide(TG)1224417..440619  bpPrimer
AB3035851Dinucleotide(GT)2652401..452755  bpPrimer
AB0816281Dinucleotide(TG)61122213..334441  bpPrimer
AB3034511Dinucleotide(TC)612580..591740  bpPrimer
AB3035021Dinucleotide(AG)1632297..328589  bpPrimer
AB3034431Dinucleotide(GA)1020180..1991154  bpPrimer
AB3034432Dinucleotide(GA)612225..2361154  bpPrimer
AB3034433Dinucleotide(AG)714261..2741154  bpPrimer
AB3034434Trinucleotide(AAT)515486..5001154  bpPrimer
AB0601731Dinucleotide(AC)173425..58120  bpPrimer
AB3034961Mononucleotide(A)1010206..2151782  bpPrimer
AB3034962Dinucleotide(CT)2550911..9601782  bpPrimer
AB3034963Dinucleotide(CT)8161174..11891782  bpPrimer
AB3036051Dinucleotide(TG)612307..3181294  bpPrimer
AB3036052Dinucleotide(TG)1938321..3581294  bpPrimer
AB0816321Dinucleotide(CA)816137..152306  bpPrimer
AB3035201Dinucleotide(TG)3468738..8051165  bpPrimer
AB3034361Dinucleotide(CT)612353..364569  bpPrimer
AB3034362Dinucleotide(TC)612366..377569  bpPrimer
AB3035781Dinucleotide(TG)3264818..8811085  bpPrimer
AB3034981Dinucleotide(CT)1020849..8681310  bpPrimer
AB3034982Dinucleotide(TC)714872..8851310  bpPrimer
AB3034983Dinucleotide(TC)816888..9031310  bpPrimer
AB3035091Dinucleotide(GT)612104..115982  bpPrimer
AB3035092Dinucleotide(TC)918174..191982  bpPrimer
AB3035741Dinucleotide(GA)2754448..501820  bpPrimer
AB3034891Dinucleotide(AG)714440..453579  bpPrimer
AB3035061Dinucleotide(AG)612730..7411402  bpPrimer
AB3035941Dinucleotide(TG)4182694..7751237  bpPrimer
AB3035942Dinucleotide(TG)1326782..8071237  bpPrimer
AB3034471Dinucleotide(AG)816565..5801319  bpPrimer
AB3034472Dinucleotide(CT)1632676..7071319  bpPrimer
KP3180241Trinucleotide(GAG)515197..211511  bpPrimer
KP3180191Trinucleotide(TAT)618301..318618  bpPrimer
KP3180251Trinucleotide(TGC)515301..315615  bpPrimer
KP3180221Dinucleotide(GA)816301..316616  bpPrimer
KP3180271Tetranucleotide(TCTG)520301..320721  bpPrimer
KP3180272Dinucleotide(TC)918404..421721  bpPrimer
KP3180201Dinucleotide(TC)714301..314676  bpPrimer
KP3180202Dinucleotide(TC)612365..376676  bpPrimer
KP3180211Tetranucleotide(TGTC)520120..139439  bpPrimer
KP3180261Tetranucleotide(AACA)520301..320620  bpPrimer
KP3180231Pentanucleotide(ATTCA)525301..325625  bpPrimer
 
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