Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Makaira nigricans [15]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AF2165021Tetranucleotide(AGAT)62452..75279  bpPrimer
AF2165022Tetranucleotide(AGAT)239280..171279  bpPrimer
AF2165023Dinucleotide(GT)714215..228279  bpPrimer
JF7912471Tetranucleotide(ATCT)1976489..564735  bpPrimer
JF7912521Tetranucleotide(ATCT)1768161..228321  bpPrimer
AF2165011Tetranucleotide(ATAG)520107..126257  bpPrimer
AF2165012Tetranucleotide(TAGA)520136..155257  bpPrimer
AF2165013Tetranucleotide(TAGA)1976160..235257  bpPrimer
AF2164981Tetranucleotide(GATA)3112458..181342  bpPrimer
JF7912451Tetranucleotide(ATCT)2288320..407613  bpPrimer
JF7912491Tetranucleotide(TATC)2080550..629748  bpPrimer
JF7912511Tetranucleotide(GATA)2496229..324399  bpPrimer
JF7912512Tetranucleotide(AGAT)1040328..367399  bpPrimer
JF7912461Tetranucleotide(AGAT)832438..469629  bpPrimer
JF7912462Tetranucleotide(GATA)2288479..566629  bpPrimer
JF7912501Tetranucleotide(AGAT)1872104..175527  bpPrimer
AF2164991Tetranucleotide(GATA)93688..123298  bpPrimer
AF2164992Tetranucleotide(TAGA)832126..157298  bpPrimer
AF2165001Tetranucleotide(TAGA)208052..131281  bpPrimer
JF7912431Tetranucleotide(GATA)124893..140490  bpPrimer
JF7912432Mononucleotide(T)1010228..237490  bpPrimer
JF7912441Tetranucleotide(ATCT)2184211..294329  bpPrimer
JF7912481Tetranucleotide(ATAG)166460..123435  bpPrimer
JF7912482Tetranucleotide(GATA)624127..150435  bpPrimer
 
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