Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Horabagrus brachysoma [11]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
DQ7800221Dinucleotide(GT)285649..104162  bpPrimer
DQ7800181Dinucleotide(TG)153029..58136  bpPrimer
DQ7800231Trinucleotide(ATT)824141..164275  bpPrimer
DQ7800232Dinucleotide(GA)1326204..229275  bpPrimer
DQ8889011Dinucleotide(TG)193896..133175  bpPrimer
DQ7800201Dinucleotide(TC)142867..94299  bpPrimer
DQ7800211Trinucleotide(TAA)51562..76181  bpPrimer
DQ7800212Dinucleotide(GT)336678..143181  bpPrimer
DQ7800171Dinucleotide(GA)183634..69166  bpPrimer
DQ7800172Dinucleotide(GA)71481..94166  bpPrimer
DQ8888991Dinucleotide(GA)81645..60154  bpPrimer
DQ8888992Dinucleotide(GA)112263..84154  bpPrimer
DQ7800161Dinucleotide(AC)1632135..166192  bpPrimer
DQ7800191Dinucleotide(GT)816172..187208  bpPrimer
 
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