Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Species index
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Seriola quinqueradiata [482]Sillago sihama [149]Scomberomorus commerson [117]Schizothorax richardsonii [104]
 
Scomber japonicus [92]Salmo trutta [79]Scatophagus argus [76]Schistura sikmaiensis [71]
 
Siganus fuscescens [65]Seriola lalandi [53]Serranus cabrilla [34]Sphyrna lewini [26]
 
Salvelinus fontinalis [22]Sinilabeo dero [20]Scartelaos histophorus [17]Setipinna tenuifilis [17]
 
Scarus rubroviolaceus [17]Sperata seenghala [15]Salmo trutta fario [14]Stegostoma fasciatum [14]
 
Syngnathoides biaculeatus [14]Schizopyge niger [12]Salmo trutta trutta [11]Silonia silondia [11]
 
Sillago parvisquamis [11]Setipinna taty [11]Salmo salar [9]Siganus canaliculatus [9]
 
Saurida nebulosa [8]Sarotherodon melanotheron heudelotii [8]Symphodus ocellatus [7]Sparus aurata [6]
 
Squalius aradensis [6]Sarotherodon melanotheron [5]Sardina pilchardus [4]Sperata aor [3]
 
Spathodus erythrodon [3]Sebastes chrysomelas [1]Silurus meridionalis [1]Sebastes auriculatus [1]
 
 
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