FMiR

 

Fish Mitogenome Resource
 

 
  Home Genome view SSR analysis Similarity search About database
 
 
External query sequence analysis
  Sequence analysis and similarity search
The module supports the individual analysis of gene, protein, RNAs and D-loop sequences for each species of this database. There are provoided drop down selection for dataset (Gene, Protein and Other sequences), molecular type (gene list, protein list and other nucleotide sequences) and query species belonging to FMiR. The module is restricted for the analysis of FMiR sequences only. Another program has developed for Similarity search to the query of external sequence.
  1. Gene:  Similarity search for gene sequences can be performed by selecting the 'Gene' dataset and name of 'Genes' and query species from 'Species list'. The target selection displays a selection list of all families of FMiR.
  2. Protein: Similarity search for mitochondrial proteins can be performed by selecting the 'Protein' dataset and name of 'Proteins' and query species from 'Species list'. The target selection displays a selection list of all families of FMiR.
  3. Other sequences Similarity search for other sequences(RNAs and D-loop) can be performed by selecting the 'Other nucleotide' dataset and name of 'Nucleotiodes' and query species from 'Species list'. The target selection displays a selection list of all families of FMiR.
Select parameters to identify homologous species
Dataset 
 
Genes 

Word size:         Maximum number of alignments:         Minimum percent identity:  

 
Proteins 
Nucleotides 

Word size:         Maximum number of alignments:         Minimum percent identity:  

 

Species list 

      
 

 
Home  CABin  Support &Feedback

Copyright© NBFGR (ICAR), All Rights Reserved.