Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats statistics

The program finds the frequency of different type of repeats from the records available in FishMicrosat and displays in the tabular and pie chart form.

Maximum repeats types AC 9896 | TG 8022 | CA 7508

Mono nucleotide repeatsDi nucleotide repeatsTri nucleotide repeats
Tetra nucleotide repeatsPenta nucleotide RepeatsHexa nucleotide repeats
 
RepeatsFrequencyRepeatsFrequency
AAAT
707
TTTA
481
ATCT
445
AGAT
429
TATC
414
GATA
402
TCTA
386
ATAG
376
AATA
321
ATTT
313
TATT
313
TAGA
259
TTAT
254
GATG
238
AAAC
232
CTAT
228
AGAC
228
TCTG
215
TTTG
207
TCCA
201
TAAA
190
ATCC
164
ATAA
137
TTTC
134
TGTC
125
ACAG
121
CATC
120
TGGA
111
ATGG
109
GACA
106
AAAG
101
CAGA
99
CTGT
91
GTCT
89
AGAA
88
ATTC
88
AATG
87
TCTT
87
GGAT
82
TGTT
76
TTCT
73
TATG
67
CCAT
67
GAAA
67
CTTT
65
AATC
63
ATAC
63
TGTA
62
TCAT
61
AAGA
56
ATCA
55
ATGA
52
TTCA
52
TGAA
51
TCAA
50
ACAT
50
ATTG
49
ACAA
48
TGAT
48
CATT
45
GAAT
44
CAAT
44
TTGT
43
CAAA
40
GTTT
40
TTGA
39
CACG
36
AACA
35
AATT
35
GTGA
34
CATA
33
CTCA
32
CACT
30
TACA
29
ATGT
28
ACTC
27
GTAT
27
GATT
27
TTAA
26
GTGC
24
GAGT
24
ATTA
23
TCAC
23
ACTG
22
TGAC
22
TAAT
21
TGCG
21
TGAG
18
GCAC
17
TCAG
16
CGCA
16
CAGT
16
AGTG
15
AGTC
15
TTAG
14
CGTG
13
CTGC
13
GAAG
13
CTTC
12
AACT
12
TAGT
11
CAGG
11
AAGG
11
ACTA
11
GTCC
11
GAGG
10
TTCC
10
AGTT
9
GTCA
9
AGGA
8
GACT
8
CAAC
8
GTTA
8
AACC
8
GCGT
8
CTGA
7
TACG
7
ACGT
7
GCAG
7
GGAC
7
GACG
7
GTCG
6
TCCT
6
TAAC
6
TTGG
6
CTAA
6
CTAC
6
AAGT
6
CCTC
5
TACT
5
CTGG
5
TCCC
5
ACGG
5
ACCT
5
CCCT
5
TGCC
5
GTAC
4
GGAG
4
GGCT
4
GCCT
4
GTTC
4
CAGC
4
CCAC
4
TAGG
4
CTCC
4
GTTG
4
TACC
4
ACCA
4
ATGC
4
CCTT
4
TGGT
3
ACGC
3
TAGC
3
TTAC
3
ATCG
3
CGTC
3
GCTG
3
AGGC
3
AGGG
3
GGAA
3
CGTA
3
GTAA
3
TCCG
3
CCCA
2
CGCT
2
AAGC
2
CACC
2
CATG
2
CCGT
2
GAAC
2
GGTC
2
GGTG
2
CCTG
2
GGGA
2
CCTA
2
TTCG
2
GGTA
2
AGCC
2
GCAT
1
GGCA
1
GCCA
1
CTAG
1
CGAG
1
ACTT
1
GGTT
1
GTGG
1
TGGC
1
GACC
1
CTCG
1
GCTA
1
TAAG
1
AGCT
1
CGAA
1
TCGC
1
TGCT
1
TCGT
1
GTAG
1
CTTA
1
CAAG
1
AGCG
1
AGGT
1
GAGC
1
ACCC
1
 
This pie chart repersents maximum frequencies of all types (mono, di, tri, tetera, penta and hexa) nucleotide repeats.

 
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