Fish and Shellfish Microsatellite Database
 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Bagridae9
Cichlidae 9
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Salmo salar1699
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
  Repeats statistics

The program finds the frequency of different type of repeats from the records available in FishMicrosat and displays in the tabular and pie chart form.

Maximum repeats types AC 10329 | TG 8529 | CA 7860

Mono nucleotide repeatsDi nucleotide repeatsTri nucleotide repeats
Tetra nucleotide repeatsPenta nucleotide RepeatsHexa nucleotide repeats
 
RepeatsFrequencyRepeatsFrequency
AAT
2705
TTA
2372
ATT
2147
TAA
1695
ATA
1507
TAT
1466
AAC
678
TTG
626
TGA
370
TCA
341
CAT
332
ATC
321
GAT
308
TGT
288
ACA
276
TTC
275
AAG
273
ATG
266
CAA
242
GAG
235
TAC
218
TAG
195
CAG
191
TCT
182
GTT
171
AGA
159
CTT
149
GAA
140
TCC
139
CTC
121
GGA
118
CTG
116
TGC
113
AGG
109
ACT
107
GCT
106
CTA
104
AGT
98
AGC
89
CCT
88
GCA
84
GTA
82
CCA
37
CAC
31
TGG
31
GTG
31
GGT
16
ACC
16
TCG
13
CGG
12
ACG
12
CCG
12
GAC
11
GCC
8
GCG
6
CGT
6
GGC
6
GTC
4
CGC
3
CGA
2
 
This pie chart repersents maximum frequencies of all types (mono, di, tri, tetera, penta and hexa) nucleotide repeats.
 
Home  CABin home  Support &Feedback
Copyright© NBFGR (ICAR), All Rights Reserved.
Designed and developed by NABG team, NBFGR, Lucknow