Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats statistics

The program finds the frequency of different type of repeats from the records available in FishMicrosat and displays in the tabular and pie chart form.

Maximum repeats types AC 9896 | TG 8022 | CA 7508

Mono nucleotide repeatsDi nucleotide repeatsTri nucleotide repeats
Tetra nucleotide repeatsPenta nucleotide RepeatsHexa nucleotide repeats
 
RepeatsFrequencyRepeatsFrequency
AAT
2699
TTA
2366
ATT
2144
TAA
1693
ATA
1502
TAT
1466
AAC
677
TTG
625
TGA
369
TCA
340
CAT
331
ATC
321
GAT
306
TGT
288
ACA
276
TTC
275
AAG
272
ATG
265
CAA
242
GAG
232
TAC
218
TAG
195
CAG
187
TCT
182
GTT
171
AGA
159
CTT
149
TCC
139
GAA
139
CTC
121
GGA
118
CTG
116
TGC
113
ACT
107
AGG
106
GCT
105
CTA
104
AGT
98
AGC
87
CCT
87
GCA
84
GTA
82
CCA
37
CAC
31
TGG
31
GTG
30
ACC
16
GGT
16
TCG
13
CCG
12
CGG
12
ACG
12
GAC
11
GCC
8
CGT
6
GCG
6
GGC
6
GTC
4
CGC
3
CGA
2
 
This pie chart repersents maximum frequencies of all types (mono, di, tri, tetera, penta and hexa) nucleotide repeats.

 
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