Fish and Shellfish Microsatellite Database
 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Bagridae9
Cichlidae 9
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats statistics

The program finds the frequency of different type of repeats from the records available in FishMicrosat and displays in the tabular and pie chart form.

Maximum repeats types AC 19793 | TG 16047 | CA 15018

Mono nucleotide repeatsDi nucleotide repeatsTri nucleotide repeats
Tetra nucleotide repeatsPenta nucleotide RepeatsHexa nucleotide repeats
 
RepeatsFrequencyRepeatsFrequency
AAT
5400
TTA
4733
ATT
4288
TAA
3386
ATA
3005
TAT
2932
AAC
1355
TTG
1251
TGA
738
TCA
681
CAT
663
ATC
642
GAT
612
TGT
576
ACA
552
TTC
550
AAG
545
ATG
531
CAA
484
GAG
464
TAC
436
TAG
390
CAG
374
TCT
364
GTT
342
AGA
318
CTT
298
GAA
279
TCC
278
CTC
242
GGA
236
CTG
232
TGC
226
ACT
214
AGG
212
GCT
210
CTA
208
AGT
196
AGC
174
CCT
174
GCA
168
GTA
164
CCA
74
TGG
62
CAC
62
GTG
60
ACC
32
GGT
32
TCG
26
ACG
24
CCG
24
CGG
24
GAC
22
GCC
16
CGT
12
GGC
12
GCG
12
GTC
8
CGC
6
CGA
4
 
This pie chart repersents maximum frequencies of all types (mono, di, tri, tetera, penta and hexa) nucleotide repeats.
 
Home  CABin home  Support &Feedback
Copyright© NBFGR (ICAR), All Rights Reserved.
Designed and developed by NABG team, NBFGR, Lucknow