A resource on hypoxia responsive genes in fish
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Upstream Analysis
Pattern analysis
HRE analysis
Sequence Analysis
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mRNA alignment
Finding ORFs
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Multiple sequence alignment
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Multiple sequence alignment and anlysis
Query:
Gene symbol ccn2b(100124530) cellular communication network factor 2b of species
Danio rerio
Species
Acanthochromis polyacanthus
Acanthopagrus latus
Acipenser ruthenus
Alosa sapidissima
Amblyraja radiata
Amphiprion ocellaris
Anabas testudineus
Anarrhichthys ocellatus
Anguilla anguilla
Archocentrus centrarchus
Astatotilapia calliptera
Astyanax mexicanus
Austrofundulus limnaeus
Betta splendens
Boleophthalmus pectinirostris
Callorhinchus milii
Carassius auratus
Carcharodon carcharias
Chanos chanos
Cheilinus undulatus
Chelmon rostratus
Clupea harengus
Colossoma macropomum
Coregonus clupeaformis
Cottoperca gobio
Cyclopterus lumpus
Cynoglossus semilaevis
Cyprinodon tularosa
Cyprinodon variegatus
Cyprinus carpio
Danio rerio
Denticeps clupeoides
Echeneis naucrates
Electrophorus electricus
Epinephelus lanceolatus
Erpetoichthys calabaricus
Esox lucius
Etheostoma cragini
Etheostoma spectabile
Fundulus heteroclitus
Gadus morhua
Gasterosteus aculeatus
Gouania willdenowi
Gymnodraco acuticeps
Haplochromis burtoni
Hippocampus comes
Hippoglossus hippoglossus
Hippoglossus stenolepis
Ictalurus punctatus
Kryptolebias marmoratus
Labrus bergylta
Larimichthys crocea
Lates calcarifer
Latimeria chalumnae
Lepisosteus oculatus
Mastacembelus armatus
Maylandia zebra
Megalops cyprinoides
Melanotaenia boesemani
Micropterus salmoides
Monopterus albus
Morone saxatilis
Myripristis murdjan
Nematolebias whitei
Neolamprologus brichardi
Nothobranchius furzeri
Notolabrus celidotus
Notothenia coriiceps
Oncorhynchus keta
Oncorhynchus kisutch
Oncorhynchus mykiss
Oncorhynchus nerka
Oncorhynchus tshawytscha
Oreochromis aureus
Oreochromis niloticus
Oryzias latipes
Oryzias melastigma
Pangasianodon hypophthalmus
Paralichthys olivaceus
Parambassis ranga
Paramormyrops kingsleyae
Perca flavescens
Perca fluviatilis
Periophthalmus magnuspinnatus
Petromyzon marinus
Pimephales promelas
Plectropomus leopardus
Poecilia formosa
Poecilia latipinna
Poecilia mexicana
Poecilia reticulata
Polyodon spathula
Polypterus senegalus
Pseudochaenichthys georgianus
Pundamilia nyererei
Pungitius pungitius
Puntigrus tetrazona
Pygocentrus nattereri
Rhincodon typus
Salarias fasciatus
Salmo salar
Salmo trutta
Salvelinus alpinus
Salvelinus namaycush
Sander lucioperca
Scleropages formosus
Scophthalmus maximus
Scyliorhinus canicula
Sebastes umbrosus
Seriola dumerili
Seriola lalandi dorsalis
Simochromis diagramma
Sinocyclocheilus anshuiensis
Sinocyclocheilus grahami
Sinocyclocheilus rhinocerous
Sparus aurata
Sphaeramia orbicularis
Stegastes partitus
Syngnathus acus
Tachysurus fulvidraco
Takifugu rubripes
Thalassophryne amazonica
Thunnus maccoyii
Toxotes jaculatrix
Trematomus bernacchii
Xiphias gladius
Xiphophorus couchianus
Xiphophorus hellerii
Xiphophorus maculatus
Gene list:
erythropoietin a
erythropoietin b
cellular communication network factor 2a
cellular communication network factor 2b
ceruloplasmin
solute carrier family 2 member 1a
solute carrier family 2 member 2
solute carrier family 2 member 3a
insulin-like growth factor binding protein 1a
insulin-like growth factor binding protein 2a
insulin-like growth factor binding protein 2b
insulin-like growth factor binding protein 3
myoglobin
vascular endothelial growth factor Aa
vascular endothelial growth factor c
hypoxia inducible factor 1 subunit alpha a
hypoxia inducible factor 1 subunit alpha b
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1
peroxisome proliferator-activated receptor alpha a
peroxisome proliferator-activated receptor alpha b
ferritin, heavy polypeptide 1a
ferritin, heavy polypeptide 1b
transferrin-a
heme oxygenase 1a
heme oxygenase 2a
heme oxygenase 2b
hemopexin a
CREB binding protein
CREB binding protein a
CREB binding protein b
CREB regulated transcription coactivator 3
endothelial PAS domain protein 1a
endothelial PAS domain protein 1b
fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor recep
calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 2
notch receptor 2
fibrillarin
aldolase a, fructose-bisphosphate, a
lactate dehydrogenase Ba
enolase 1a, (alpha)
BCL2 interacting protein 3
caspase 3, apoptosis-related cysteine peptidase a
cadherin 5
egl-9 family hypoxia-inducible factor 3
insulin receptor substrate 2b
ATP-binding cassette, sub-family G (WHITE), member 4a
aryl-hydrocarbon receptor nuclear translocator 2
hypoxia inducible factor 1 subunit alpha inhibitor
mitogen-activated protein kinase 1
transferrin receptor 1a
phosphofructokinase, muscle a
phosphofructokinase, platelet b
phosphofructokinase, platelet a
phosphofructokinase, muscle b
ADP-dependent glucokinase
phosphofructokinase, liver b
phosphofructokinase, liver a
ADP-dependent glucokinase 2
heat shock protein 8
ATP-binding cassette, sub-family G (WHITE), member 8
ATP-binding cassette, sub-family G (WHITE), member 5
ATP-binding cassette, sub-family H, member 1
urocortin 3, like
aryl hydrocarbon receptor nuclear translocator-like 1a
aryl hydrocarbon receptor nuclear translocator-like 1b
aryl hydrocarbon receptor nuclear translocator
aryl hydrocarbon receptor nuclear translocator-like 2
mitogen-activated protein kinase 14a
mitogen-activated protein kinase kinase kinase 14a
Output:
CLUSTAL
PHYLIP
Distance method:
Uncorrected
Jukes-Cantor
Kimura
Tamura
Tajima-Nei
Jin-Nei Gamma
Maximum length:
300
350
400
450
500
550
600
Distance method: Kimura(2)
Alignment ---------------
Tree .DND ---------------
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