A database of hypoxia responsive genes in fishes
 
  Gene details for the gene Hypoxia inducible factor 1 subunit alpha a (Gene Id: 797150  Symbol: hif1aa)

Danio rerio     [Zebra danio, Zebrafish, Anju]     Family:Cyprinidae    Habitat: Freshwater    Conservation status (2015): Least Concern (LC)
Occurrence and distribution Native: India, Bangladesh, Pakistan, Myanmar, Bhutan, Nepal
Introduced: Japan, Sri Lanka, Philippines, USA, Colombia, Martinique
Systematics Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Salmophasia.
Refseq information: 1
SNo. Status RNA nucleotide accession Protein accession Genomic nucleotide accession Start position on genomic DNA End position on genomic DNA Orientation Assembly Symbol UniProtkb ID
1 PROVISIONAL NM_001308559.1 NP_001295488.1 NC_007124.7 31757330 31783585  (26255) + Reference GRCz1 hif1aa F1QNB9
 
mRNA analysis Promoter analysis of gene: Primere design of mRNA:
Similarity search : Analysis of homologous transcript:
 
PubMed links
19449054 21555741 21873635 22665266 23341543 23461336 24367256 24613281 25205386 25866969 26454018 26469318 26908177 27189481 27222589 27264935 27499207 28077310 28285553 28524872 28851829 29035725 29339404 30126845 30327615 30518608 30685453 31314708 31372513 31820205 32446740 32485057 32673542 32984302 33057104
 
GO Term: 13
SNo.Reported in speceisEvidenceQualifierGO termCategory PubMed Link
1Danio rerioIBAenablesRNA polymerase II transcription regulatory region sequence-specific DNA bindingFunction21873635
2Danio rerioIBAenablesDNA-binding transcription factor activity, RNA polymerase II-specificFunction21873635
3Danio rerioIEAlocated_innucleusComponentNot available
4Danio rerioIEAacts_upstrregulation of transcription, DNA-templatedProcessNot available
5Danio rerioIBAinvolved_iregulation of transcription by RNA polymerase IIProcess21873635
6Danio rerioIGIacts_upstrNotch signaling pathwayProcess29339404
7Danio rerioIMPacts_upstrNotch signaling pathwayProcess29339404
8Danio rerioIGIacts_upstrregulation of angiogenesisProcess28524872
9Danio rerioIEAenablesprotein dimerization activityFunctionNot available
10Danio rerioIGIacts_upstrhematopoietic stem cell differentiationProcess29339404
11Danio rerioIMPacts_upstrhematopoietic stem cell differentiationProcess29339404
12Danio rerioIBAinvolved_icellular response to hypoxiaProcess21873635
13Danio rerioIGIacts_upstrmacrophage migrationProcess28524872

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