A database of hypoxia responsive genes in fishes
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Gene Information
Upstream Analysis
Pattern analysis
HRE analysis
Sequence Analysis
Similarity search
mRNA alignment
Finding ORFs
Primer design
Multiple sequence alignment
About Database
Gene details for the gene Heme oxygenase 1a (Gene Id: 791518 Symbol: hmox1a)
Danio rerio
[Zebra danio, Zebrafish, Anju]
Family:
Cyprinidae
Habitat:
Freshwater
Conservation status (2015):
Least Concern (LC)
Occurrence and distribution
Native:
India, Bangladesh, Pakistan, Myanmar, Bhutan, Nepal
Introduced:
Japan, Sri Lanka, Philippines, USA, Colombia, Martinique
Systematics
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Salmophasia.
Refseq information: 1
SNo.
Status
RNA nucleotide accession
Protein accession
Genomic nucleotide accession
Start position on genomic DNA
End position on genomic DNA
Orientation
Assembly
Symbol
UniProtkb ID
1
PROVISIONAL
NM_001127516.1
NP_001120988.1
NC_007114.7
26011481
26017591 (6110)
-
Reference GRCz1
hmox1a
B0UXS0
mRNA analysis
Promoter analysis of gene:
Primere design of mRNA:
Similarity search :
Analysis of homologous transcript:
PubMed links
12477932
14691204
15650063
17292976
19402758
20200220
21199655
21392494
21873635
22046393
22174413
23174481
23266559
23341992
23374346
23684558
24234649
24349563
24388745
25086293
25347788
25603810
25770664
25798649
25982796
26150473
26454018
26469318
26494252
26846883
26994186
27086301
27288846
27306194
27328419
27440423
27581810
27671773
27760386
28122935
28132886
28212397
28290603
28688371
29102874
29203887
29354061
29472449
29574160
29803928
29890505
29906474
29954941
30248094
30253254
30399559
30453236
30547092
30548797
30708965
30861618
31004821
31018538
31022495
31096425
31154177
31349543
31374495
31417608
31509586
31536771
31545217
31654769
31695470
31699484
31761585
31767327
31837856
31858786
32094353
32114347
32191835
32387861
32443250
32457041
32647188
33022287
GO Term: 14
SNo.
Reported in speceis
Evidence
Qualifier
GO term
Category
PubMed Link
1
Danio rerio
IDA
acts_upstr
response to hypoxia
Process
14691204
2
Danio rerio
IBA
enables
heme oxygenase (decyclizing) activity
Function
21873635
3
Danio rerio
IEA
enables
heme oxygenase (decyclizing) activity
Function
Not available
4
Danio rerio
IMP
enables
heme oxygenase (decyclizing) activity
Function
26994186
5
Danio rerio
IBA
involved_i
heme oxidation
Process
21873635
6
Danio rerio
IEA
acts_upstr
heme oxidation
Process
Not available
7
Danio rerio
IBA
involved_i
response to oxidative stress
Process
21873635
8
Danio rerio
IEA
enables
oxidoreductase activity
Function
Not available
9
Danio rerio
IBA
enables
heme binding
Function
21873635
10
Danio rerio
IBA
involved_i
heme catabolic process
Process
21873635
11
Danio rerio
IMP
acts_upstr
regulation of respiratory gaseous exchange
Process
27581810
12
Danio rerio
IEA
enables
metal ion binding
Function
Not available
13
Danio rerio
IBA
involved_i
iron ion homeostasis
Process
21873635
14
Danio rerio
IDA
acts_upstr
cellular response to xenobiotic stimulus
Process
14691204
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