A database of hypoxia responsive genes in fishes
  Gene details for the gene Hypoxia inducible factor 1 subunit alpha b (Gene Id: 393202  Symbol: hif1ab)

Danio rerio     [Zebra danio, Zebrafish, Anju]     Family:Cyprinidae    Habitat: Freshwater    Conservation status (2015): Least Concern (LC)
Occurrence and distribution Native: India, Bangladesh, Pakistan, Myanmar, Bhutan, Nepal
Introduced: Japan, Sri Lanka, Philippines, USA, Colombia, Martinique
Systematics Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Salmophasia.
Refseq information: 2
SNo. Status RNA nucleotide accession Protein accession Genomic nucleotide accession Start position on genomic DNA End position on genomic DNA Orientation Assembly Symbol UniProtkb ID
1 SUPPRESSED NM_200233.1 - - 0 0  (0) ? - hif1ab Q6EHI4
2 VALIDATED NM_001310042.1 NP_001296971.1 NC_007131.7 20326610 20355576  (28966) - Reference GRCz1 hif1ab Q6EHI4
 
mRNA analysis Promoter analysis of gene: Primere design of mRNA:
Similarity search : Analysis of homologous transcript:
 
PubMed links
12207891 12477932 15520368 16428465 16997637 17656667 18186356 18977541 19123687 19198653 19449054 20085798 20571107 20694827 20952382 21343420 21555741 21873635 21931746 22511881 22665266 22684503 23034716 23151342 23326562 23341543 23392835 23421720 23454196 23461336 23712262 23831555 24055561 24247081 24367256 24568569 24574340 24613281 24613356 24642059 24850928 24967596 25000307 25117453 25205386 25347788 25603810 25730270 25771346 25866969 26034287 26052946 26265472 26469318 26681691 26908177 26933814 27189481 27222589 27264782 27264935 27549025 27562099 27578788 27751871 27802147 27802896 27974833 28077310 28285553 28524872 28602865 28624236 28634424 28851829 29036334 29329032 29494911 29672321 30126845 30327615
 
GO Term: 24
SNo.Reported in speceisEvidenceQualifierGO termCategory PubMed Link
1Danio rerioIDA-transcription regulatory region sequence-specific DNA bindingFunction27222589
2Danio rerioIBA-DNA-binding transcription factor activity, RNA polymerase II-specificFunction21873635
3Danio rerioIEP-response to hypoxiaProcess21343420
4Danio rerioIMP-response to hypoxiaProcess27802147
5Danio rerioIMP-neural crest cell migrationProcess23712262
6Danio rerioIEA-DNA bindingFunctionNot available
7Danio rerioIDA-chromatin bindingFunction23421720
8Danio rerioIEA-DNA-binding transcription factor activityFunctionNot available
9Danio rerioIBA-nucleusComponent21873635
10Danio rerioIEA-nucleusComponentNot available
11Danio rerioIDA-regulation of transcription, DNA-templatedProcess24613356
12Danio rerioIEA-regulation of transcription, DNA-templatedProcessNot available
13Danio rerioIBA-regulation of transcription by RNA polymerase IIProcess21873635
14Danio rerioIGI-motor neuron axon guidanceProcess26681691
15Danio rerioIMP-motor neuron axon guidanceProcess26681691
16Danio rerioIMP-response to glucoseProcess23341543
17Danio rerioIGI-regulation of angiogenesisProcess28524872
18Danio rerioIMP-negative regulation of transcription, DNA-templatedProcess26681691
19Danio rerioIBA-positive regulation of transcription by RNA polymerase IIProcess21873635
20Danio rerioIEA-protein dimerization activityFunctionNot available
21Danio rerioIGI-neuron apoptotic processProcess19123687
22Danio rerioIGI-hematopoietic stem cell differentiationProcess27751871
23Danio rerioIMP-hematopoietic stem cell differentiationProcess27751871
24Danio rerioIGI-macrophage migrationProcess28524872

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