A database of hypoxia responsive genes in fishes
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Pattern analysis
HRE analysis
Sequence Analysis
Similarity search
mRNA alignment
Finding ORFs
Primer design
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About Database
Gene details for the gene Cellular communication network factor 2a (Gene Id: 321449 Symbol: ccn2a)
Danio rerio
[Zebra danio, Zebrafish, Anju]
Family:
Cyprinidae
Habitat:
Freshwater
Conservation status (2015):
Least Concern (LC)
Occurrence and distribution
Native:
India, Bangladesh, Pakistan, Myanmar, Bhutan, Nepal
Introduced:
Japan, Sri Lanka, Philippines, USA, Colombia, Martinique
Systematics
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Salmophasia.
Refseq information: 2
SNo.
Status
RNA nucleotide accession
Protein accession
Genomic nucleotide accession
Start position on genomic DNA
End position on genomic DNA
Orientation
Assembly
Symbol
UniProtkb ID
1
PROVISIONAL
NM_001015041.2
NP_001015041.1
NC_007131.7
25340813
25343489 (2676)
+
Reference GRCz1
ccn2a
Q5RI33
2
PROVISIONAL
NM_001015041.2
NP_001015041.1
NW_018395073.1
210212
212888 (2676)
+
Reference GRCz1
ccn2a
Q5RI33
mRNA analysis
Promoter analysis of gene:
Primere design of mRNA:
Similarity search :
Analysis of homologous transcript:
PubMed links
11116087
12477932
14718378
15677724
16950203
17997003
18455719
20503371
21116857
21873635
21887364
22729936
23499292
24130815
24247081
24416389
24873830
25313964
25617839
26190107
26209644
26209646
26719149
26967905
27122168
27149851
27378925
27428308
27581547
27811277
27935819
27993976
28369143
28466843
28602865
28654864
28692648
28705894
29283341
29302617
29406519
29522173
29529391
30133415
30295714
30348863
30418535
30475205
30530669
30742093
31042481
31267430
31269749
32032546
32570707
32843528
33163496
33234717
33377648
GO Term: 14
SNo.
Reported in speceis
Evidence
Qualifier
GO term
Category
PubMed Link
1
Danio rerio
IBA
enables
integrin binding
Function
21873635
2
Danio rerio
IEA
enables
insulin-like growth factor binding
Function
Not available
3
Danio rerio
IEA
located_in
extracellular region
Component
Not available
4
Danio rerio
IBA
involved_i
cell adhesion
Process
21873635
5
Danio rerio
IBA
involved_i
signal transduction
Process
21873635
6
Danio rerio
IEA
acts_upstr
signal transduction
Process
Not available
7
Danio rerio
IMP
acts_upstr
endoderm development
Process
25313964
8
Danio rerio
IBA
enables
heparin binding
Function
21873635
9
Danio rerio
IMP
acts_upstr
notochord development
Process
16950203
10
Danio rerio
IBA
is_active_
extracellular matrix
Component
21873635
11
Danio rerio
IMP
acts_upstr
regeneration
Process
27811277
12
Danio rerio
IMP
acts_upstr
chordate embryonic development
Process
16950203
13
Danio rerio
IMP
acts_upstr
definitive hemopoiesis
Process
31042481
14
Danio rerio
IBA
involved_i
negative regulation of cell death
Process
21873635
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