A database of hypoxia responsive genes in fishes
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Gene Information
Upstream Analysis
Pattern analysis
HRE analysis
Sequence Analysis
Similarity search
mRNA alignment
Finding ORFs
Primer design
Multiple sequence alignment
About Database
Gene details for the gene Insulin-like growth factor binding protein 1a (Gene Id: 317638 Symbol: igfbp1a)
Danio rerio
[Zebra danio, Zebrafish, Anju]
Family:
Cyprinidae
Habitat:
Freshwater
Conservation status (2015):
Least Concern (LC)
Occurrence and distribution
Native:
India, Bangladesh, Pakistan, Myanmar, Bhutan, Nepal
Introduced:
Japan, Sri Lanka, Philippines, USA, Colombia, Martinique
Systematics
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Salmophasia.
Refseq information: 1
SNo.
Status
RNA nucleotide accession
Protein accession
Genomic nucleotide accession
Start position on genomic DNA
End position on genomic DNA
Orientation
Assembly
Symbol
UniProtkb ID
1
VALIDATED
NM_173283.4
NP_775390.3
NC_007131.7
6808773
6812600 (3827)
-
Reference GRCz1
igfbp1a
Q90YJ7
mRNA analysis
Promoter analysis of gene:
Primere design of mRNA:
Similarity search :
Analysis of homologous transcript:
PubMed links
12072407
12477932
15644436
15797461
16109975
16428465
16872691
17537438
17828398
18769480
18803835
19200601
20081093
20085798
20937294
21052758
21266413
21368212
21505050
21558420
21601967
21653807
21873635
21931746
22511881
22816610
22899520
23034716
23349717
23421720
23919627
23936019
24051129
24850928
25000307
25086293
25294126
25519729
25730270
25759395
26141390
26441656
26765566
26908177
27289203
27409813
27516442
27538710
27580812
27689414
28149290
28205556
28217809
28441764
28634424
28772162
28982700
29209278
29592890
29678724
29803886
29980668
30290758
30611731
30679186
30771614
31070548
31170402
31344535
31501519
32051014
32630437
33105605
33329019
GO Term: 13
SNo.
Reported in speceis
Evidence
Qualifier
GO term
Category
PubMed Link
1
Danio rerio
IMP
acts_upstr
response to hypoxia
Process
15644436
2
Danio rerio
IEA
enables
insulin-like growth factor binding
Function
Not available
3
Danio rerio
IEA
located_in
extracellular region
Component
Not available
4
Danio rerio
IBA
is_active_
extracellular space
Component
21873635
5
Danio rerio
IDA
located_in
cytoplasm
Component
21558420
6
Danio rerio
IDA
acts_upstr
negative regulation of cell population proliferation
Process
15644436
7
Danio rerio
IEA
enables
growth factor binding
Function
Not available
8
Danio rerio
IMP
acts_upstr
regeneration
Process
27516442
9
Danio rerio
IBA
enables
insulin-like growth factor I binding
Function
21873635
10
Danio rerio
IDA
enables
insulin-like growth factor I binding
Function
18769480
11
Danio rerio
IBA
enables
insulin-like growth factor II binding
Function
21873635
12
Danio rerio
IDA
enables
insulin-like growth factor II binding
Function
18769480
13
Danio rerio
IBA
involved_i
regulation of insulin-like growth factor receptor signaling pathway
Process
21873635
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