A database of hypoxia responsive genes in fishes
Home
Gene Information
Upstream Analysis
Pattern analysis
HRE analysis
Sequence Analysis
Similarity search
mRNA alignment
Finding ORFs
Primer design
Multiple sequence alignment
About Database
Gene details for the gene Transferrin-a (Gene Id: 30255 Symbol: tfa)
Danio rerio
[Zebra danio, Zebrafish, Anju]
Family:
Cyprinidae
Habitat:
Freshwater
Conservation status (2015):
Least Concern (LC)
Occurrence and distribution
Native:
India, Bangladesh, Pakistan, Myanmar, Bhutan, Nepal
Introduced:
Japan, Sri Lanka, Philippines, USA, Colombia, Martinique
Systematics
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Salmophasia.
Refseq information: 2
SNo.
Status
RNA nucleotide accession
Protein accession
Genomic nucleotide accession
Start position on genomic DNA
End position on genomic DNA
Orientation
Assembly
Symbol
UniProtkb ID
1
SUPPRESSED
NM_001015057.1
-
-
0
0 (0)
?
-
tfa
Q6P3G0
2
VALIDATED
NM_001291499.1
NP_001278428.1
NC_007113.7
16780633
16792176 (11543)
+
Reference GRCz1
tfa
Q6P3G0
mRNA analysis
Promoter analysis of gene:
Primere design of mRNA:
Similarity search :
Analysis of homologous transcript:
PubMed links
11435403
11731487
12477932
15108321
15732137
15902304
16079152
16109975
16322560
16490192
16630661
16631158
17084657
17289917
17804254
17884332
17945029
18095340
18248185
18455246
18585699
18602103
18635606
18971206
19011686
19047682
19127516
19201949
19304954
20011517
20044811
20430021
21052758
21283739
21873635
22155693
22219376
22489616
22537488
22982668
23341543
23349717
23412571
23413775
23427857
23697887
23790486
23939298
24317228
24341334
24341765
24388745
24394404
24395442
24530296
24611545
25294126
25548877
25866969
26015096
26327813
26414925
26441656
26469318
26657776
26884397
27189481
27474396
27538710
27562099
28062374
28076796
28252024
28263819
28300160
28628668
28982700
29248853
29757947
29871925
29909292
30392910
30515132
30904762
30925289
30992706
31158555
31301631
31349543
32094353
32113105
32151677
32446740
33163496
GO Term: 14
SNo.
Reported in speceis
Evidence
Qualifier
GO term
Category
PubMed Link
1
Danio rerio
IEA
located_in
extracellular region
Component
Not available
2
Danio rerio
IBA
is_active_
extracellular space
Component
21873635
3
Danio rerio
IEA
located_in
extracellular space
Component
Not available
4
Danio rerio
IBA
is_active_
early endosome
Component
21873635
5
Danio rerio
IBA
is_active_
plasma membrane
Component
21873635
6
Danio rerio
IEA
acts_upstr
ion transport
Process
Not available
7
Danio rerio
IBA
involved_i
iron ion transport
Process
21873635
8
Danio rerio
IMP
acts_upstr
iron ion transport
Process
19047682
9
Danio rerio
IDA
acts_upstr
response to bacterium
Process
17804254
10
Danio rerio
IBA
involved_i
antibacterial humoral response
Process
21873635
11
Danio rerio
IMP
acts_upstr
hemoglobin biosynthetic process
Process
19047682
12
Danio rerio
IEA
enables
metal ion binding
Function
Not available
13
Danio rerio
IBA
is_active_
recycling endosome
Component
21873635
14
Danio rerio
IEA
acts_upstr
iron ion homeostasis
Process
Not available
Home
CABin
Support &Feedback
Copyright ©2016 NBFGR (ICAR), All Rights Reserved.