A database of hypoxia responsive genes in fishes
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Gene Information
Upstream Analysis
Pattern analysis
HRE analysis
Sequence Analysis
Similarity search
mRNA alignment
Finding ORFs
Primer design
Multiple sequence alignment
About Database
Gene details for the gene CREB regulated transcription coactivator 3 (Gene Id: 114142739 Symbol: crtc3)
Xiphophorus couchianus
[Monterrey platyfish]
Family:
Poeciliidae
Habitat:
Freshwater
Conservation status (2015):
Endangered (EN)
Occurrence and distribution
Endemic:
Mexico
Systematics
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Girardinus; Dactylophallus.
Refseq information: 6
SNo.
Status
RNA nucleotide accession
Protein accession
Genomic nucleotide accession
Start position on genomic DNA
End position on genomic DNA
Orientation
Assembly
Symbol
UniProtkb ID
1
MODEL
XM_028014157.1
XP_027869958.1
NC_040231.1
2859532
2907856 (48324)
+
Reference X_cou
crtc3
-
2
MODEL
XM_028014158.1
XP_027869959.1
NC_040231.1
2859532
2907856 (48324)
+
Reference X_cou
crtc3
-
3
MODEL
XM_028014159.1
XP_027869960.1
NC_040231.1
2859532
2907856 (48324)
+
Reference X_cou
crtc3
-
4
MODEL
XM_028014161.1
XP_027869962.1
NC_040231.1
2859532
2907856 (48324)
+
Reference X_cou
crtc3
-
5
MODEL
XM_028014162.1
XP_027869963.1
NC_040231.1
2859532
2907856 (48324)
+
Reference X_cou
crtc3
-
6
MODEL
XM_028014163.1
XP_027869964.1
NC_040231.1
2859532
2907856 (48324)
+
Reference X_cou
crtc3
-
mRNA analysis
Promoter analysis of gene:
Primere design of mRNA:
Similarity search :
Analysis of homologous transcript:
GO Term: 11
SNo.
Reported in speceis
Evidence
Qualifier
GO term
Category
PubMed Link
1
Danio rerio
IMP
acts_upstr
response to hypoxia
Process
25840431
2
Danio rerio
IBA
is_active_
nucleus
Component
21873635
3
Danio rerio
IEA
located_in
nucleus
Component
Not available
4
Danio rerio
IBA
is_active_
cytoplasm
Component
21873635
5
Danio rerio
IEA
located_in
cytoplasm
Component
Not available
6
Danio rerio
IBA
enables
cAMP response element binding protein binding
Function
21873635
7
Danio rerio
IEA
enables
cAMP response element binding protein binding
Function
Not available
8
Danio rerio
IBA
involved_i
positive regulation of CREB transcription factor activity
Process
21873635
9
Danio rerio
IEA
acts_upstr
positive regulation of CREB transcription factor activity
Process
Not available
10
Danio rerio
IBA
involved_i
positive regulation of transcription by RNA polymerase II
Process
21873635
11
Danio rerio
IEA
acts_upstr
protein homotetramerization
Process
Not available
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