FMiR

 

Fish Mitogenome Resource
 

 
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  FMiR species statistic  
Conservation status
Category Species
Extinct (EX)1
Extinct in the Wild (EW)1
LR/cd1
Critically Endangered (CR)12
Near Threatened (NT)38
Endangered (EN) 68
Vulnerable (VU) 104
Data Deficient (DD)110
Least Concern (LC)568
Not Reported1373
Ecosystem
Habitat Species
Freshwater1114
Saltwater1058
Saltwater and freshwater104
 
  Top 10 FMiR Families  
Family Species
Cyprinidae416
Cichlidae80
Gobiidae68
Tetraodontidae61
Salmonidae53
Nemacheilidae41
Serranidae41
Clupeidae38
Cobitidae35
Pomacanthidae34
  About FMiR
FMiR is a comprehensive and curated database of complete mitochondrial genome of fishes belonging to different ecosystems that includes precise tools for data analysis and retrieval of information on taxonomy, habitat, distribution, occurrence and conservation status of fishes. It has been specifically developed to help the researches in annotation of newly sequenced mitogenome, identification of species specific/habitat specific SSR markers and primer designing and performing sequence similarity search. In this way, FMiR would be useful to those working on fish genomics, molecular phylogeny and taxonomy, populations genetics etc. FMiR offers following programs for its users for retrieval and analysis of mitogenome data.

Information browser
FMiR facilitates browsing of mitogenome information of fish and also provides information like habitat, distribution, taxonomy, conservation status for each species of the database. It includes genome view integrated with different option for browsing information of species of interest. The keyword search also enables to browse information by using key word like species name, family name, Genbank accession number, Genbank identifier (gi) and pubmed id etc.

SSR analysis and primer design
SSR analysis and primer designing interfaces have been implemented in FMiR for the diagnosis of species specific or habitat specific SSR markers. The primer designing program enables to design primers for each identified SSR loci for laboratory applications.

Sequence similarity search
Complete and partial sequence of FMiR and user provided query sequence of mitogenome can be analyzed for the purpose of homology search, gene identification and annotation of newly sequenced mitogenome.

Description about analysis program
FMiR integrates graphical description for handling different tools and programs, that can be invoked using 'About database' menu item.

Current status
Species: 2276 Family: 385 Order: 67 Specimen records: 2276 Squences: 2276 Last update: 2018-05-15 12:04:20


How to cite FMiR
Nagpure NS, Rashid I, Pathak AK, Singh M, Pati R, Singh SP, et al. (2015) FMiR: A Curated Resource of Mitochondrial DNA Information for Fish. PLoS ONE 10(8): e0136711. doi:10.1371/journal. pone.0136711
 
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