A database of hypoxia responsive genes in fishes
 
  Gene details for the gene Aryl-hydrocarbon receptor nuclear translocator 2 (Gene Id: 107662321  Symbol: arnt2)

Sinocyclocheilus anshuiensis          Family:Cyprinidae    Habitat: Freshwater    Conservation status (2015): Not Reported
Occurrence and distribution Native: China
Systematics Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Salmophasia.
Refseq information: 1
SNo. Status RNA nucleotide accession Protein accession Genomic nucleotide accession Start position on genomic DNA End position on genomic DNA Orientation Assembly Symbol UniProtkb ID
1 MODEL XM_016452307.1 XP_016307793.1 NW_015551075.1 1084070 1164847  (80777) + Reference SAMN0 arnt2 -
 
mRNA analysis Promoter analysis of gene: Primere design of mRNA:
Similarity search : Analysis of homologous transcript:
 
 
GO Term: 29
SNo.Reported in speceisEvidenceQualifierGO termCategory PubMed Link
1Danio rerioIBAenablesRNA polymerase II cis-regulatory region sequence-specific DNA bindingFunction21873635
2Danio rerioIBAenablesDNA-binding transcription factor activity, RNA polymerase II-specificFunction21873635
3Danio rerioIDAinvolved_iresponse to hypoxiaProcessNot available
4Danio rerioIMPacts_upstrcardiac ventricle morphogenesisProcess19374551
5Danio rerioIEAenablesDNA bindingFunctionNot available
6Danio rerioIDAenablesDNA-binding transcription factor activityFunctionNot available
7Danio rerioIEAenablesDNA-binding transcription factor activityFunctionNot available
8Danio rerioIBAis_active_nucleusComponent21873635
9Danio rerioIClocated_innucleusComponentNot available
10Danio rerioIEAlocated_innucleusComponentNot available
11Danio rerioIEApart_oftranscription regulator complexComponentNot available
12Danio rerioIEAlocated_incytoplasmComponentNot available
13Danio rerioIDAinvolved_iregulation of transcription, DNA-templatedProcessNot available
14Danio rerioIEAacts_upstrregulation of transcription, DNA-templatedProcessNot available
15Danio rerioIBAinvolved_iregulation of transcription by RNA polymerase IIProcess21873635
16Danio rerioIDAinvolved_isignal transductionProcessNot available
17Danio rerioIGIacts_upstraxon guidanceProcess23222439
18Danio rerioIMPacts_upstraxon guidanceProcess23222439
19Danio rerioISSinvolved_ibrain developmentProcessNot available
20Danio rerioIMPacts_upstrdiencephalon developmentProcess19234064
21Danio rerioIMPacts_upstrventricular system developmentProcess19374551
22Danio rerioIMPacts_upstrhypothalamus cell differentiationProcess19234064
23Danio rerioIBApart_ofaryl hydrocarbon receptor complexComponent21873635
24Danio rerioIPIacts_upstrpositive regulation of transcription, DNA-templatedProcess16306231
25Danio rerioIEAenablesprotein dimerization activityFunctionNot available
26Danio rerioIMPacts_upstrswim bladder inflationProcess19374551
27Danio rerioIMPacts_upstrdopaminergic neuron differentiationProcess19234064
28Danio rerioIMPacts_upstrliver morphogenesisProcess19374551
29Danio rerioIMPacts_upstrcell-cell adhesionProcess19123687

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